ATTED-II : GeneCoexpression result

Species	Gene	Description
ath-m.4.hor	AT1G09290	uncharacterized protein
ath-u.5	AT1G09290	uncharacterized protein
ath-r.7	AT1G09290	uncharacterized protein
ath-m.9	AT1G09290	uncharacterized protein
ath-e.2	AT1G09290	uncharacterized protein
ath-m.4.bio	AT1G09290	uncharacterized protein
ath-m.4.lig	AT1G09290	uncharacterized protein
ath-m.4.str	AT1G09290	uncharacterized protein
ath-m.4.tis	AT1G09290	uncharacterized protein
bra-r.6	103836345	uncharacterized LOC103836345
bna-r.1	125591683	uncharacterized LOC125591683
bna-r.1	BNACNNG06750D	uncharacterized BNACNNG06750D
bna-r.1	BNAA08G26510D	uncharacterized BNAA08G26510D
ghi-r.1	107942780	uncharacterized LOC107942780
ghi-r.1	107909941	uncharacterized LOC107909941
cit-r.1	102607912	uncharacterized LOC102607912
gma-u.5	100797260	uncharacterized LOC100797260
vvi-u.5	100267955	uncharacterized LOC100267955
ppo-u.5	7462637	uncharacterized LOC7462637
mtr-u.5	25485599	uncharacterized LOC25485599
sly-u.5	101253921	uncharacterized LOC101253921
sot-r.1	102578326	uncharacterized LOC102578326
nta-r.1	107813379	uncharacterized LOC107813379
nta-r.1	107772554	uncharacterized LOC107772554
osa-u.5	4330282	uncharacterized LOC4330282
zma-u.5	100217057	uncharacterized LOC100217057
tae-r.2	123127973	uncharacterized LOC123127973
tae-r.2	123137654	uncharacterized LOC123137654
tae-r.2	123145072	uncharacterized LOC123145072
hvu-r.1	123402289	uncharacterized LOC123402289
sbi-r.1	110434369	uncharacterized LOC110434369
bdi-r.1	100839515	uncharacterized LOC100839515
cre-r.1	CHLRE_17g713000v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0006400 [list] [network] tRNA modification

(41 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

GO:0003723 [list] [network] RNA binding

(1764 genes)

IEA

Protein

NP_172400.2 [sequence] [blastp]

Subcellular
localization
wolf

nucl 6, cyto_nucl 4, chlo 1, cyto 1, plas 1, extr 1, chlo_mito 1

(predict for NP_172400.2)

Subcellular
localization
TargetP

other 8

(predict for NP_172400.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.hor for AT1G09290	ath-u.5 for AT1G09290	ath-r.7 for AT1G09290	ath-m.9 for AT1G09290	ath-e.2 for AT1G09290	ath-m.4.bio for AT1G09290	ath-m.4.lig for AT1G09290	ath-m.4.str for AT1G09290	ath-m.4.tis for AT1G09290	bra-r.6 for 103836345	bna-r.1 for 125591683	bna-r.1 for BNACNNG06750D	bna-r.1 for BNAA08G26510D	ghi-r.1 for 107942780	ghi-r.1 for 107909941	cit-r.1 for 102607912	gma-u.5 for 100797260	vvi-u.5 for 100267955	ppo-u.5 for 7462637	mtr-u.5 for 25485599	sly-u.5 for 101253921	sot-r.1 for 102578326	nta-r.1 for 107813379	nta-r.1 for 107772554	osa-u.5 for 4330282	zma-u.5 for 100217057	tae-r.2 for 123127973	tae-r.2 for 123137654	tae-r.2 for 123145072	hvu-r.1 for 123402289	sbi-r.1 for 110434369	bdi-r.1 for 100839515	cre-r.1 for CHLRE_17g713000v5

Ortholog

Ortholog ID: 10439

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

uncharacterized protein

uncharacterized LOC103836345

uncharacterized LOC125591683

uncharacterized BNACNNG06750D

uncharacterized BNAA08G26510D

uncharacterized LOC107942780

uncharacterized LOC107909941

uncharacterized LOC102607912

uncharacterized LOC100797260

uncharacterized LOC100267955

uncharacterized LOC7462637

uncharacterized LOC25485599

uncharacterized LOC101253921

uncharacterized LOC102578326

uncharacterized LOC107813379

uncharacterized LOC107772554

uncharacterized LOC4330282

uncharacterized LOC100217057

uncharacterized LOC123127973

uncharacterized LOC123137654

uncharacterized LOC123145072

uncharacterized LOC123402289

uncharacterized LOC110434369

uncharacterized LOC100839515

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04122	Sulfur relay system	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	5
bra00220	Arginine biosynthesis	2
bra01210	2-Oxocarboxylic acid metabolism	2
bra01230	Biosynthesis of amino acids	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00260	Glycine, serine and threonine metabolism	4
bna00460	Cyanoamino acid metabolism	4
bna00630	Glyoxylate and dicarboxylate metabolism	4
bna00670	One carbon pool by folate	4
bna01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00260	Glycine, serine and threonine metabolism	4
bna00460	Cyanoamino acid metabolism	4
bna00630	Glyoxylate and dicarboxylate metabolism	4
bna00670	One carbon pool by folate	4
bna01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00260	Glycine, serine and threonine metabolism	4
bna00460	Cyanoamino acid metabolism	4
bna00630	Glyoxylate and dicarboxylate metabolism	4
bna00670	One carbon pool by folate	4
bna01200	Carbon metabolism	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	2
gma04120	Ubiquitin mediated proteolysis	2
gma04141	Protein processing in endoplasmic reticulum	2
gma03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	3
sot03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	2
nta03013	Nucleocytoplasmic transport	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03008	Ribosome biogenesis in eukaryotes	2
nta03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	2
osa03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma00260	Glycine, serine and threonine metabolism	2
zma00261	Monobactam biosynthesis	2
zma00270	Cysteine and methionine metabolism	2
zma00300	Lysine biosynthesis	2
zma01210	2-Oxocarboxylic acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03020	RNA polymerase	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03082	ATP-dependent chromatin remodeling	2
sbi04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00261	Monobactam biosynthesis	2
bdi00300	Lysine biosynthesis	2
bdi01230	Biosynthesis of amino acids	2

Expression

Expression pattern

Entrez Gene ID^*

837450

103836345

125591683

106453158

106362352

107942780

107909941

102607912

100797260

100267955

7462637

25485599

101253921

102578326

107813379

107772554

4330282

100217057

123127973

123137654

123145072

123402289

110434369

100839515

66056974

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to AT1G09290 (ath-m.4.hor coexpression data)

Top 50 enrichment test to AT1G09290 (ath-m.4.hor coexpression data)


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	9	1	3	2	1	1	1	1	1	1	1	2	1	1	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT1G09290 (ath-m.4.hor coexpression data)

Top 50 enrichment test to AT1G09290 (ath-m.4.hor coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**