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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.hor   Lhca5   photosystem I light harvesting complex protein 5 
 ath-u.5   Lhca5   photosystem I light harvesting complex protein 5 
 ath-r.7   Lhca5   photosystem I light harvesting complex protein 5 
 ath-m.9   Lhca5   photosystem I light harvesting complex protein 5 
 ath-e.2   Lhca5   photosystem I light harvesting complex protein 5 
 ath-m.4.bio   Lhca5   photosystem I light harvesting complex protein 5 
 ath-m.4.lig   Lhca5   photosystem I light harvesting complex protein 5 
 ath-m.4.str   Lhca5   photosystem I light harvesting complex protein 5 
 ath-m.4.tis   Lhca5   photosystem I light harvesting complex protein 5 
 bna-r.1   106380622   photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like 
 bna-r.1   106371873   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 ghi-r.1   107918058   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 ghi-r.1   121203567   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 cit-r.1   102613058   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 gma-u.5   100804934   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 vvi-u.5   100255844   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 ppo-u.5   18104896   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 mtr-u.5   11431390   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 sly-u.5   101257186   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 sot-r.1   102590384   chlorophyll a-b binding protein P4, chloroplastic 
 nta-r.1   107775375   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 nta-r.1   107774945   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 osa-u.5   4330828   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 zma-u.5   100281795   light harvesting complex a/b protein4 
 tae-r.2   123138360   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 tae-r.2   123145600   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 tae-r.2   123128477   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 hvu-r.1   123404545   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 sbi-r.1   8075198   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 bdi-r.1   100835021   photosystem I chlorophyll a/b-binding protein 5, chloroplastic 
 cre-r.1   CHLRE_06g272650v5   uncharacterized protein 
 cre-r.1   CHLRE_16g687900v5   uncharacterized protein 

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Top 50 coexpressed genes to Lhca5 (ath-m.4.hor coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to Lhca5 (ath-m.4.hor coexpression data)

CoexMap"841099"


athLhca5 | Entrez gene ID : 841099      
Species ath bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bra
Paralog 9 2 2 1 1 1 1 1 1 1 2 1 1 3 1 1 1 2 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00196 [list] [network] Photosynthesis - antenna proteins (22 genes)
GO BP
GO:0009768 [list] [network] photosynthesis, light harvesting in photosystem I  (10 genes)  IDA IGI  
GO:0009645 [list] [network] response to low light intensity stimulus  (20 genes)  IEP  
GO:0009644 [list] [network] response to high light intensity  (71 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP  
GO CC
GO:0009782 [list] [network] photosystem I antenna complex  (2 genes)  IDA  
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  HDA IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  HDA ISM  
GO MF
GO:0031409 [list] [network] pigment binding  (2 genes)  IDA  
GO:0042803 [list] [network] protein homodimerization activity  (237 genes)  IDA  
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_175137.1 [sequence] [blastp]
NP_849778.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 2,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_175137.1)
chlo 6,  mito 2,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_849778.1)
Subcellular
localization
TargetP
mito 8  (predict for NP_175137.1)
mito 8  (predict for NP_849778.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.hor
for
Lhca5
ath-u.5
for
Lhca5
ath-r.7
for
Lhca5
ath-m.9
for
Lhca5
ath-e.2
for
Lhca5
ath-m.4.bio
for
Lhca5
ath-m.4.lig
for
Lhca5
ath-m.4.str
for
Lhca5
ath-m.4.tis
for
Lhca5
bna-r.1
for
106380622
bna-r.1
for
106371873
ghi-r.1
for
107918058
ghi-r.1
for
121203567
cit-r.1
for
102613058
gma-u.5
for
100804934
vvi-u.5
for
100255844
ppo-u.5
for
18104896
mtr-u.5
for
11431390
sly-u.5
for
101257186
sot-r.1
for
102590384
nta-r.1
for
107775375
nta-r.1
for
107774945
osa-u.5
for
4330828
zma-u.5
for
100281795
tae-r.2
for
123138360
tae-r.2
for
123145600
tae-r.2
for
123128477
hvu-r.1
for
123404545
sbi-r.1
for
8075198
bdi-r.1
for
100835021
cre-r.1
for
CHLRE_06g272650v5
cre-r.1
for
CHLRE_16g687900v5


Ortholog ID: 9827
Species ath bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi cre cre
Symbol Lhca5 LOC106380622 LOC106371873 LOC107918058 LOC121203567 LOC102613058 LOC100804934 LOC100255844 LOC18104896 LOC11431390 LOC101257186 LOC102590384 LOC107775375 LOC107774945 LOC4330828 LOC100281795 LOC123138360 LOC123145600 LOC123128477 LOC123404545 LOC8075198 LOC100835021 CHLRE_06g272650v5 CHLRE_16g687900v5
Function* photosystem I light harvesting complex protein 5 photosystem I chlorophyll a/b-binding protein 5, chloroplastic-like photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic chlorophyll a-b binding protein P4, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic light harvesting complex a/b protein4 photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic photosystem I chlorophyll a/b-binding protein 5, chloroplastic uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00195 Photosynthesis 6
ath01200 Carbon metabolism 4
ath00710 Carbon fixation by Calvin cycle 3
ath00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 5
bna01200 Carbon metabolism 5
bna00195 Photosynthesis 3
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00710 Carbon fixation by Calvin cycle 5
bna01200 Carbon metabolism 5
bna00195 Photosynthesis 3
bna00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 4
ghi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00860 Porphyrin metabolism 4
ghi00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00195 Photosynthesis 5
vvi00196 Photosynthesis - antenna proteins 4
vvi01200 Carbon metabolism 3
vvi00630 Glyoxylate and dicarboxylate metabolism 2
vvi00710 Carbon fixation by Calvin cycle 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00196 Photosynthesis - antenna proteins 9
ppo00195 Photosynthesis 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00710 Carbon fixation by Calvin cycle 5
mtr01200 Carbon metabolism 5
mtr00195 Photosynthesis 3
mtr00196 Photosynthesis - antenna proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00195 Photosynthesis 7
sly01200 Carbon metabolism 6
sly00630 Glyoxylate and dicarboxylate metabolism 3
sly00710 Carbon fixation by Calvin cycle 3
sly00260 Glycine, serine and threonine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 5
nta01200 Carbon metabolism 5
nta00260 Glycine, serine and threonine metabolism 4
nta00460 Cyanoamino acid metabolism 4
nta00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00630 Glyoxylate and dicarboxylate metabolism 5
nta01200 Carbon metabolism 5
nta00260 Glycine, serine and threonine metabolism 4
nta00460 Cyanoamino acid metabolism 4
nta00670 One carbon pool by folate 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01200 Carbon metabolism 5
osa00710 Carbon fixation by Calvin cycle 4
osa00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00195 Photosynthesis 4
zma01200 Carbon metabolism 4
zma00710 Carbon fixation by Calvin cycle 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 8
tae00195 Photosynthesis 7
tae00710 Carbon fixation by Calvin cycle 4
tae00190 Oxidative phosphorylation 4
tae00260 Glycine, serine and threonine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01200 Carbon metabolism 6
tae00710 Carbon fixation by Calvin cycle 3
tae00195 Photosynthesis 3
tae00260 Glycine, serine and threonine metabolism 3
tae00630 Glyoxylate and dicarboxylate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00630 Glyoxylate and dicarboxylate metabolism 4
tae01200 Carbon metabolism 4
tae00260 Glycine, serine and threonine metabolism 3
tae00670 One carbon pool by folate 3
tae00785 Lipoic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 4
bdi00630 Glyoxylate and dicarboxylate metabolism 3
bdi00260 Glycine, serine and threonine metabolism 2
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00196 Photosynthesis - antenna proteins 10
cre00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00196 Photosynthesis - antenna proteins 10
cre00195 Photosynthesis 8
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 841099 106380622 106371873 107918058 121203567 102613058 100804934 100255844 18104896 11431390 101257186 102590384 107775375 107774945 4330828 100281795 123138360 123145600 123128477 123404545 8075198 100835021 5721808 5717675
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