ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8056136	vacuolar protein sorting-associated protein 53 A
zma-u.5	100501884	uncharacterized LOC100501884
osa-u.5	4324975	vacuolar protein sorting-associated protein 53 A
tae-r.2	123071647	vacuolar protein sorting-associated protein 53 A
tae-r.2	123079982	vacuolar protein sorting-associated protein 53 A
tae-r.2	123062804	vacuolar protein sorting-associated protein 53 A
hvu-r.1	123445010	vacuolar protein sorting-associated protein 53 A
bdi-r.1	100826427	vacuolar protein sorting-associated protein 53 A
ath-u.5	HIT1	Membrane trafficking VPS53 family protein
ath-u.5	AT1G50970	Membrane trafficking VPS53 family protein
gma-u.5	100799852	vacuolar protein sorting-associated protein 53 A
gma-u.5	100791359	vacuolar protein sorting-associated protein 53 A
sly-u.5	101256582	vacuolar protein sorting-associated protein 53 A
bra-r.6	103868618	vacuolar protein sorting-associated protein 53 A
vvi-u.5	100251847	vacuolar protein sorting-associated protein 53 A
ppo-u.5	7455871	vacuolar protein sorting-associated protein 53 A
mtr-u.5	11409544	vacuolar protein sorting-associated protein 53 A
ghi-r.1	107886392	vacuolar protein sorting-associated protein 53 A
ghi-r.1	107920334	vacuolar protein sorting-associated protein 53 A
bna-r.1	106415510	vacuolar protein sorting-associated protein 53 A
bna-r.1	106451660	vacuolar protein sorting-associated protein 53 A
sot-r.1	102584559	vacuolar protein sorting-associated protein 53 A
cit-r.1	102630431	vacuolar protein sorting-associated protein 53 A
nta-r.1	107794431	vacuolar protein sorting-associated protein 53 A
nta-r.1	107760155	vacuolar protein sorting-associated protein 53 A
cre-r.1	CHLRE_06g259600v5	uncharacterized protein

Annotation

functional annotation

KEGG

GO BP

GO:0042147 [list] [network] retrograde transport, endosome to Golgi

(18 genes)

IEA

GO CC

GO:0000938 [list] [network] GARP complex

(5 genes)

IEA

GO MF

Protein

XP_021312770.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 5, cyto 3, nucl 1, plas 1, golg 1, nucl_plas 1, golg_plas 1

(predict for XP_021312770.1)

Subcellular
localization
TargetP

other 5, chlo 3

(predict for XP_021312770.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8056136	zma-u.5 for 100501884	osa-u.5 for 4324975	tae-r.2 for 123071647	tae-r.2 for 123079982	tae-r.2 for 123062804	hvu-r.1 for 123445010	bdi-r.1 for 100826427	ath-u.5 for HIT1	ath-u.5 for AT1G50970	gma-u.5 for 100799852	gma-u.5 for 100791359	sly-u.5 for 101256582	bra-r.6 for 103868618	vvi-u.5 for 100251847	ppo-u.5 for 7455871	mtr-u.5 for 11409544	ghi-r.1 for 107886392	ghi-r.1 for 107920334	bna-r.1 for 106415510	bna-r.1 for 106451660	sot-r.1 for 102584559	cit-r.1 for 102630431	nta-r.1 for 107794431	nta-r.1 for 107760155	cre-r.1 for CHLRE_06g259600v5

Ortholog

Ortholog ID: 9837

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

vacuolar protein sorting-associated protein 53 A

uncharacterized LOC100501884

vacuolar protein sorting-associated protein 53 A

Membrane trafficking VPS53 family protein

vacuolar protein sorting-associated protein 53 A

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04141	Protein processing in endoplasmic reticulum	4
zma04144	Endocytosis	3
zma04142	Lysosome	2
zma05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04142	Lysosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	8
tae04144	Endocytosis	7
tae05100	Bacterial invasion of epithelial cells	6
tae04148	Efferocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	5
tae04144	Endocytosis	5
tae05100	Bacterial invasion of epithelial cells	4
tae04141	Protein processing in endoplasmic reticulum	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04142	Lysosome	8
tae04144	Endocytosis	6
tae05100	Bacterial invasion of epithelial cells	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04144	Endocytosis	3
hvu04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04144	Endocytosis	5
ath04142	Lysosome	3
ath00562	Inositol phosphate metabolism	2
ath05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04142	Lysosome	2
gma04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04144	Endocytosis	4
gma05100	Bacterial invasion of epithelial cells	3
gma04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2
bna03440	Homologous recombination	2
bna04141	Protein processing in endoplasmic reticulum	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00240	Pyrimidine metabolism	2
bna01232	Nucleotide metabolism	2
bna03440	Homologous recombination	2
bna04141	Protein processing in endoplasmic reticulum	2
bna04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	3
sot04144	Endocytosis	3
sot05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03022	Basal transcription factors	2
cit03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00510	N-Glycan biosynthesis	3
nta00513	Various types of N-glycan biosynthesis	3
nta04141	Protein processing in endoplasmic reticulum	3
nta00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
nta04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00563	Glycosylphosphatidylinositol (GPI)-anchor biosynthesis	2
nta04144	Endocytosis	2
nta00510	N-Glycan biosynthesis	2
nta00513	Various types of N-glycan biosynthesis	2
nta04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04142	Lysosome	4
cre04144	Endocytosis	2

Expression

Expression pattern

Entrez Gene ID^*

8056136

100501884

4324975

123071647

123079982

123062804

123445010

100826427

841472

841519

100799852

100791359

101256582

103868618

100251847

7455871

11409544

107886392

107920334

106415510

106451660

102584559

102630431

107794431

107760155

5722062

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8056136 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8056136 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	1	3	1	1	2	2	1	1	1	1	1	2	2	1	1	2	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8056136 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8056136 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**