ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8056581	bromodomain and WD repeat-containing protein 1
zma-u.5	103634840	bromodomain and WD repeat-containing protein 3
osa-u.5	9268022	uncharacterized LOC9268022
tae-r.2	123102004	PH-interacting protein
tae-r.2	123110120	PH-interacting protein
tae-r.2	123119126	PH-interacting protein
hvu-r.1	123395698	bromodomain and WD repeat-containing protein 3
hvu-r.1	123450584	uncharacterized LOC123450584
bdi-r.1	100838154	bromodomain and WD repeat-containing DDB_G0285837
ath-u.5	AT2G47410	WD40 domain-containing protein
ath-u.5	AT5G49430	WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein
gma-u.5	100796497	bromodomain and WD repeat-containing protein 3
gma-u.5	100818665	PH-interacting protein
gma-u.5	100819598	PH-interacting protein
sly-u.5	101243927	uncharacterized LOC101243927
sly-u.5	101244028	uncharacterized LOC101244028
bra-r.6	103843746	PH-interacting protein
bra-r.6	103854602	bromodomain and WD repeat-containing protein 3
bra-r.6	103874623	bromodomain and WD repeat-containing protein 1
vvi-u.5	100248159	uncharacterized LOC100248159
vvi-u.5	100248563	uncharacterized LOC100248563
ppo-u.5	18102606	uncharacterized LOC18102606
ppo-u.5	7491256	uncharacterized LOC7491256
mtr-u.5	11416840	PH-interacting protein
mtr-u.5	11414887	bromodomain and WD repeat-containing protein 3
ghi-r.1	107888953	bromodomain and WD repeat-containing protein 1
ghi-r.1	107954363	PH-interacting protein
ghi-r.1	107892115	bromodomain and WD repeat-containing protein 1
bna-r.1	106451892	PH-interacting protein-like
bna-r.1	106402983	bromodomain and WD repeat-containing protein 3-like
bna-r.1	106392330	PH-interacting protein-like
sot-r.1	102601826	PH-interacting protein
sot-r.1	102601289	bromodomain and WD repeat-containing protein 1
cit-r.1	102628602	uncharacterized LOC102628602
cit-r.1	102622617	uncharacterized LOC102622617
nta-r.1	107808998	uncharacterized LOC107808998
nta-r.1	107802938	uncharacterized LOC107802938
nta-r.1	107774669	uncharacterized LOC107774669
cre-r.1	CHLRE_02g078251v5	uncharacterized protein
cre-r.1	CHLRE_02g078150v5	uncharacterized protein

Top 50 coexpressed genes to 8056581 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8056581 (sbi-r.1 coexpression data)

CoexMap"8056581"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0008360 [list] [network] regulation of cell shape	(8 genes)	IEA
GO:0007010 [list] [network] cytoskeleton organization	(199 genes)	IEA
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II	(365 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(2977 genes)

IEA

GO MF

GO:0005515 [list] [network] protein binding

(4172 genes)

IEA

Protein

XP_021313034.1 [sequence] [blastp]
XP_021313035.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, chlo 1, pero 1	(predict for XP_021313034.1)
nucl 9, chlo 1, pero 1	(predict for XP_021313035.1)

Subcellular
localization
TargetP

other 5, scret 4	(predict for XP_021313034.1)
other 5, scret 4	(predict for XP_021313035.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8056581	zma-u.5 for 103634840	osa-u.5 for 9268022	tae-r.2 for 123102004	tae-r.2 for 123110120	tae-r.2 for 123119126	hvu-r.1 for 123395698	hvu-r.1 for 123450584	bdi-r.1 for 100838154	ath-u.5 for AT2G47410	ath-u.5 for AT5G49430	gma-u.5 for 100796497	gma-u.5 for 100818665	gma-u.5 for 100819598	sly-u.5 for 101243927	sly-u.5 for 101244028	bra-r.6 for 103843746	bra-r.6 for 103854602	bra-r.6 for 103874623	vvi-u.5 for 100248159	vvi-u.5 for 100248563	ppo-u.5 for 18102606	ppo-u.5 for 7491256	mtr-u.5 for 11416840	mtr-u.5 for 11414887	ghi-r.1 for 107888953	ghi-r.1 for 107954363	ghi-r.1 for 107892115	bna-r.1 for 106451892	bna-r.1 for 106402983	bna-r.1 for 106392330	sot-r.1 for 102601826	sot-r.1 for 102601289	cit-r.1 for 102628602	cit-r.1 for 102622617	nta-r.1 for 107808998	nta-r.1 for 107802938	nta-r.1 for 107774669	cre-r.1 for CHLRE_02g078251v5	cre-r.1 for CHLRE_02g078150v5

Ortholog

Ortholog ID: 3789

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

bromodomain and WD repeat-containing protein 1

bromodomain and WD repeat-containing protein 3

uncharacterized LOC9268022

PH-interacting protein

bromodomain and WD repeat-containing protein 3

uncharacterized LOC123450584

bromodomain and WD repeat-containing DDB_G0285837

WD40 domain-containing protein

WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein

bromodomain and WD repeat-containing protein 3

PH-interacting protein

bromodomain and WD repeat-containing protein 3

uncharacterized LOC101243927

uncharacterized LOC101244028

PH-interacting protein

bromodomain and WD repeat-containing protein 3

bromodomain and WD repeat-containing protein 1

uncharacterized LOC100248159

uncharacterized LOC100248563

uncharacterized LOC18102606

uncharacterized LOC7491256

PH-interacting protein

bromodomain and WD repeat-containing protein 3

bromodomain and WD repeat-containing protein 1

PH-interacting protein

PH-interacting protein-like

bromodomain and WD repeat-containing protein 1

PH-interacting protein

bromodomain and WD repeat-containing protein 1

uncharacterized LOC102628602

uncharacterized LOC102622617

uncharacterized LOC107802938

uncharacterized LOC107774669

uncharacterized LOC107805045

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	2
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03018	RNA degradation	2
osa03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03040	Spliceosome	2
gma02010	ABC transporters	2
gma04146	Peroxisome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	3
gma03040	Spliceosome	2
gma03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03083	Polycomb repressive complex	3
gma03250	Viral life cycle - HIV-1	3
gma03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03082	ATP-dependent chromatin remodeling	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03082	ATP-dependent chromatin remodeling	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03040	Spliceosome	3
vvi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00310	Lysine degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	4
mtr03015	mRNA surveillance pathway	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	3
mtr03040	Spliceosome	2
mtr03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03020	RNA polymerase	3
ghi03420	Nucleotide excision repair	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03082	ATP-dependent chromatin remodeling	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03082	ATP-dependent chromatin remodeling	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03022	Basal transcription factors	2
cit03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03015	mRNA surveillance pathway	2
nta04382	Cornified envelope formation	2
nta03022	Basal transcription factors	2
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04712	Circadian rhythm - plant	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	2
nta04712	Circadian rhythm - plant	2
nta03040	Spliceosome	2

Expression

Expression pattern

Entrez Gene ID^*

8056581

103634840

9268022

123102004

123110120

123119126

123395698

123450584

100838154

819354

835003

100796497

100819598

100784354

101243927

101244028

103843746

103854602

103874623

100248159

100248563

18102606

7491256

11416840

11414887

107888953

107892115

107909993

106392330

106348869

106348808

102601826

102601289

102628602

102622617

107802938

107774669

107805045

66052239

5727247

The preparation time of this page was 0.2 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	1	3	2	1	2	3	2	3	2	2	2	3	3	2	2	3	2

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8056581 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8056581 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**