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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8059963   pentatricopeptide repeat-containing protein At3g49730 
 zma-u.5   103643953   pentatricopeptide repeat-containing protein At3g49730 
 osa-u.5   4333980   pentatricopeptide repeat-containing protein At3g49730 
 tae-r.2   123095980   pentatricopeptide repeat-containing protein At3g49730 
 tae-r.2   123087010   pentatricopeptide repeat-containing protein At3g49730 
 tae-r.2   123090949   pentatricopeptide repeat-containing protein At3g49730 
 hvu-r.1   123451085   pentatricopeptide repeat-containing protein At3g49730-like 
 bdi-r.1   100824550   pentatricopeptide repeat-containing protein At3g49730 
 ath-u.5   AT5G65820   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   AT3G49730   Tetratricopeptide repeat (TPR)-like superfamily protein 
 gma-u.5   100789597   putative pentatricopeptide repeat-containing protein At5g65820 
 gma-u.5   100781204   putative pentatricopeptide repeat-containing protein At5g65820 
 bra-r.6   103874019   putative pentatricopeptide repeat-containing protein At5g65820 
 vvi-u.5   100264711   putative pentatricopeptide repeat-containing protein At5g65820 
 ppo-u.5   7497279   pentatricopeptide repeat-containing protein At3g49730 
 mtr-u.5   25501572   pentatricopeptide repeat-containing protein At3g49730 
 ghi-r.1   107950525   putative pentatricopeptide repeat-containing protein At5g65820 
 ghi-r.1   107935260   putative pentatricopeptide repeat-containing protein At5g65820 
 bna-r.1   106347394   pentatricopeptide repeat-containing protein At3g49730 
 bna-r.1   106346622   putative pentatricopeptide repeat-containing protein At5g65820 
 bna-r.1   106348179   putative pentatricopeptide repeat-containing protein At5g65820 
 sot-r.1   102583404   pentatricopeptide repeat-containing protein At3g49730-like 
 cit-r.1   102615847   putative pentatricopeptide repeat-containing protein At5g65820 
 nta-r.1   107787990   putative pentatricopeptide repeat-containing protein At5g65820 
 nta-r.1   107793504   putative pentatricopeptide repeat-containing protein At5g65820 

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Top 50 coexpressed genes to 8059963 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8059963 (sbi-r.1 coexpression data)

CoexMap"8059963"


sbiLOC8059963 | Entrez gene ID : 8059963      
Species sbi zma osa tae hvu bdi ath gma bra vvi ppo mtr ghi bna sot cit nta cre sly
Paralog 1 1 1 3 1 1 2 2 1 1 1 1 2 3 1 1 2 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO MF
GO:0005515 [list] [network] protein binding  (4172 genes)  IEA  
Protein XP_002466528.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 2,  mito 1,  golg 1  (predict for XP_002466528.2)
Subcellular
localization
TargetP
mito 6,  other 4  (predict for XP_002466528.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8059963
zma-u.5
for
103643953
osa-u.5
for
4333980
tae-r.2
for
123095980
tae-r.2
for
123087010
tae-r.2
for
123090949
hvu-r.1
for
123451085
bdi-r.1
for
100824550
ath-u.5
for
AT5G65820
ath-u.5
for
AT3G49730
gma-u.5
for
100789597
gma-u.5
for
100781204
bra-r.6
for
103874019
vvi-u.5
for
100264711
ppo-u.5
for
7497279
mtr-u.5
for
25501572
ghi-r.1
for
107950525
ghi-r.1
for
107935260
bna-r.1
for
106347394
bna-r.1
for
106346622
bna-r.1
for
106348179
sot-r.1
for
102583404
cit-r.1
for
102615847
nta-r.1
for
107787990
nta-r.1
for
107793504


Ortholog ID: 9754
Species sbi zma osa tae tae tae hvu bdi ath ath gma gma bra vvi ppo mtr ghi ghi bna bna bna sot cit nta nta
Symbol LOC8059963 LOC103643953 LOC4333980 LOC123095980 LOC123087010 LOC123090949 LOC123451085 LOC100824550 AT5G65820 AT3G49730 LOC100789597 LOC100781204 LOC103874019 LOC100264711 LOC7497279 LOC25501572 LOC107950525 LOC107935260 LOC106347394 LOC106346622 LOC106348179 LOC102583404 LOC102615847 LOC107787990 LOC107793504
Function* pentatricopeptide repeat-containing protein At3g49730 pentatricopeptide repeat-containing protein At3g49730 pentatricopeptide repeat-containing protein At3g49730 pentatricopeptide repeat-containing protein At3g49730 pentatricopeptide repeat-containing protein At3g49730 pentatricopeptide repeat-containing protein At3g49730 pentatricopeptide repeat-containing protein At3g49730-like pentatricopeptide repeat-containing protein At3g49730 Pentatricopeptide repeat (PPR) superfamily protein Tetratricopeptide repeat (TPR)-like superfamily protein putative pentatricopeptide repeat-containing protein At5g65820 putative pentatricopeptide repeat-containing protein At5g65820 putative pentatricopeptide repeat-containing protein At5g65820 putative pentatricopeptide repeat-containing protein At5g65820 pentatricopeptide repeat-containing protein At3g49730 pentatricopeptide repeat-containing protein At3g49730 putative pentatricopeptide repeat-containing protein At5g65820 putative pentatricopeptide repeat-containing protein At5g65820 pentatricopeptide repeat-containing protein At3g49730 putative pentatricopeptide repeat-containing protein At5g65820 putative pentatricopeptide repeat-containing protein At5g65820 pentatricopeptide repeat-containing protein At3g49730-like putative pentatricopeptide repeat-containing protein At5g65820 putative pentatricopeptide repeat-containing protein At5g65820 putative pentatricopeptide repeat-containing protein At5g65820
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00230 Purine metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8059963 103643953 4333980 123095980 123087010 123090949 123451085 100824550 836711 28719394 100789597 100781204 103874019 100264711 7497279 25501572 107950525 107935260 106347394 106346622 106348179 102583404 102615847 107787990 107793504
The preparation time of this page was 1.5 [sec].