ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8060542	homeotic protein knotted-1
sbi-r.1	8059916	homeobox protein rough sheath 1
sbi-r.1	8084184	homeobox protein rough sheath 1
sbi-r.1	8071273	homeobox protein knotted-1-like 10
zma-u.5	100283504	KNOX1 domain containing protein
zma-u.5	100283277	homeobox protein rough sheath 1
zma-u.5	100193050	uncharacterized LOC100193050
osa-u.5	4337701	homeobox protein knotted-1-like 10
tae-r.2	123090945	homeobox protein KNOX3
bdi-r.1	100830103	homeobox protein knotted-1-like 1
bdi-r.1	100832589	homeobox protein rough sheath 1
bdi-r.1	100821336	homeobox protein knotted-1-like 12
ath-u.5	KNAT6	homeobox protein knotted-1-like 6
ath-u.5	KNAT1	homeobox knotted-like protein
ath-u.5	KNAT2	homeobox knotted-like protein
gma-u.5	100803730	homeobox protein knotted-1-like 6
gma-u.5	100805837	homeobox protein SBH1-like
sly-u.5	KN4	knotted homeodomain protein 4
sly-u.5	KN1	homeotic protein knotted-1
bra-r.6	103835665	homeobox protein knotted-1-like 6
bra-r.6	STM	homeobox protein SHOOT MERISTEMLESS
bra-r.6	103858468	homeobox protein knotted-1-like 1
vvi-u.5	100264808	homeobox protein knotted-1-like 1
vvi-u.5	100267474	homeobox protein SBH1
ppo-u.5	18105842	homeobox protein knotted-1-like 6
ppo-u.5	7467239	homeobox protein knotted-1-like 2
mtr-u.5	25482021	homeotic protein knotted-1
mtr-u.5	25486232	homeobox protein SBH1
mtr-u.5	11406488	homeobox protein knotted-1-like 1
ghi-r.1	107910050	homeobox protein SBH1
ghi-r.1	107935395	homeobox protein SBH1
ghi-r.1	107933765	homeobox protein knotted-1-like 1
bna-r.1	106414253	homeobox protein knotted-1-like 6
bna-r.1	106420956	homeobox protein knotted-1-like 6
bna-r.1	106434220	homeobox protein knotted-1-like 6
sot-r.1	102579398	homeobox protein knotted-1-like 1-like
sot-r.1	102577616	POTH1
sot-r.1	POTH15	homeobox protein knotted-1-like LET6-like
cit-r.1	102615394	homeotic protein knotted-1
cit-r.1	102628261	homeobox protein knotted-1-like 6
nta-r.1	107817797	homeobox protein knotted-1-like 1
nta-r.1	107781949	homeobox protein knotted-1-like 6

Top 50 coexpressed genes to 8060542 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8060542 (sbi-r.1 coexpression data)

CoexMap"8060542"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0006355 [list] [network] regulation of DNA-templated transcription

(1596 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(2977 genes)

IEA

GO MF

GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific	(251 genes)	IEA
GO:0003677 [list] [network] DNA binding	(1849 genes)	IEA

Protein

XP_002463952.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 10

(predict for XP_002463952.1)

Subcellular
localization
TargetP

other 6, chlo 3

(predict for XP_002463952.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8060542	sbi-r.1 for 8059916	sbi-r.1 for 8084184	sbi-r.1 for 8071273	zma-u.5 for 100283504	zma-u.5 for 100283277	zma-u.5 for 100193050	osa-u.5 for 4337701	tae-r.2 for 123090945	bdi-r.1 for 100830103	bdi-r.1 for 100832589	bdi-r.1 for 100821336	ath-u.5 for KNAT6	ath-u.5 for KNAT1	ath-u.5 for KNAT2	gma-u.5 for 100803730	gma-u.5 for 100805837	sly-u.5 for KN4	sly-u.5 for KN1	bra-r.6 for 103835665	bra-r.6 for STM	bra-r.6 for 103858468	vvi-u.5 for 100264808	vvi-u.5 for 100267474	ppo-u.5 for 18105842	ppo-u.5 for 7467239	mtr-u.5 for 25482021	mtr-u.5 for 25486232	mtr-u.5 for 11406488	ghi-r.1 for 107910050	ghi-r.1 for 107935395	ghi-r.1 for 107933765	bna-r.1 for 106414253	bna-r.1 for 106420956	bna-r.1 for 106434220	sot-r.1 for 102579398	sot-r.1 for 102577616	sot-r.1 for POTH15	cit-r.1 for 102615394	cit-r.1 for 102628261	nta-r.1 for 107817797	nta-r.1 for 107781949

Ortholog

Ortholog ID: 275

Species

sbi

zma

osa

tae

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

KNAT6

KNAT2

STM

LOC100786454

LOC100800822

LOC100803095

KN1

TKn3

POTH15

Function^*

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

homeobox protein knotted-1-like 7

liguleless 4

knotted related homeobox 5

liguleless 3

homeobox protein knotted-1-like 10

homeobox protein knotted-1-like 12

homeobox protein KNOX3

homeobox protein knotted-1-like 10

homeobox protein rough sheath 1

homeobox protein knotted-1-like 10

homeobox protein knotted-1-like 6

homeobox knotted-like protein

KNOX/ELK homeobox transcription factor

homeobox protein knotted-1-like 6

homeotic protein knotted-1

homeobox protein knotted-1-like

homeotic protein knotted-1

knotted 3 protein

class I knotted-like homeodomain protein

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like LET6

homeobox protein knotted-1-like 1

homeotic protein knotted-1

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like 2

homeobox protein SBH1

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 2

homeobox protein knotted-1-like 6

homeobox protein knotted-1-like LET6-like

homeotic protein knotted-1

homeobox protein knotted-1-like LET6

homeobox protein SHOOT MERISTEMLESS

homeobox protein knotted-1-like 1

homeobox protein knotted-1-like 6

Coexmap

Please wait a moment.

Coexpression

Please wait a moment.

KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr00430	Taurine and hypotaurine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00010	Glycolysis / Gluconeogenesis	2
sot00071	Fatty acid degradation	2
sot00350	Tyrosine metabolism	2
sot00620	Pyruvate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00940	Phenylpropanoid biosynthesis	5
cit00941	Flavonoid biosynthesis	2
cit00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04075	Plant hormone signal transduction	2

Expression

Expression pattern

Entrez Gene ID^*

8059916

8071273

8059967

541960

541961

542487

4337701

4342320

123090945

123180294

123180293

100832589

100839205

838946

843388

842534

100786454

100800822

100803095

544007

544029

543520

103835665

103858468

103852657

100255834

100248152

7478899

112327500

25482021

11406488

11415594

107938311

107924993

107895047

106404904

125600843

102581859

102601860

102615394

102609444

102614106

107817797

107781949

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	tae	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre	hvu
Paralog	4	3	1	1	3	3	2	2	3	2	2	3	3	3	3	2	2	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8060542 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8060542 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**