ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8067522	50S ribosomal protein L27
sbi-r.1	8071153	50S ribosomal protein L27
zma-u.5	101027115	50S ribosomal protein L27
osa-u.5	4335476	uncharacterized LOC4335476
osa-u.5	4345523	uncharacterized LOC4345523
osa-u.5	9271228	uncharacterized LOC9271228
tae-r.2	123077999	50S ribosomal protein L27
tae-r.2	123069505	50S ribosomal protein L27
tae-r.2	123060908	50S ribosomal protein L27
hvu-r.1	123426443	50S ribosomal protein L27-like
bdi-r.1	100846430	50S ribosomal protein L27
ath-u.5	AT2G16930	Ribosomal protein L27 family protein
ath-u.5	AT5G15220	Ribosomal protein L27 family protein
gma-u.5	100817864	50S ribosomal protein L27
gma-u.5	100782419	50S ribosomal protein L27-like
sly-u.5	101251545	uncharacterized LOC101251545
sly-u.5	101257990	uncharacterized LOC101257990
bra-r.6	103846430	50S ribosomal protein L27
bra-r.6	103856126	50S ribosomal protein L27
bra-r.6	103850976	50S ribosomal protein L27
vvi-u.5	100853593	uncharacterized LOC100853593
ppo-u.5	18111182	uncharacterized LOC18111182
mtr-u.5	11420362	50S ribosomal protein L27
ghi-r.1	107922305	50S ribosomal protein L27
ghi-r.1	107917907	50S ribosomal protein L27
bna-r.1	106364608	50S ribosomal protein L27
bna-r.1	106385940	50S ribosomal protein L27
bna-r.1	106372143	50S ribosomal protein L27-like
sot-r.1	102587654	50S ribosomal protein L27-like
sot-r.1	102591378	50S ribosomal protein L27-like
cit-r.1	102610058	uncharacterized LOC102610058
nta-r.1	107815569	uncharacterized LOC107815569
nta-r.1	107831583	uncharacterized LOC107831583
nta-r.1	107828233	uncharacterized LOC107828233

Top 50 coexpressed genes to 8067522 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8067522 (sbi-r.1 coexpression data)

CoexMap"8067522"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi03010 [list] [network] Ribosome (360 genes)

GO BP

GO:0006412 [list] [network] translation

(459 genes)

IEA

GO CC

GO:0005840 [list] [network] ribosome

(326 genes)

IEA

GO MF

GO:0003735 [list] [network] structural constituent of ribosome

(320 genes)

IEA

Protein

XP_002441389.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 7, mito 3

(predict for XP_002441389.1)

Subcellular
localization
TargetP

mito 2

(predict for XP_002441389.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8067522	sbi-r.1 for 8071153	zma-u.5 for 101027115	osa-u.5 for 4335476	osa-u.5 for 4345523	osa-u.5 for 9271228	tae-r.2 for 123077999	tae-r.2 for 123069505	tae-r.2 for 123060908	hvu-r.1 for 123426443	bdi-r.1 for 100846430	ath-u.5 for AT2G16930	ath-u.5 for AT5G15220	gma-u.5 for 100817864	gma-u.5 for 100782419	sly-u.5 for 101251545	sly-u.5 for 101257990	bra-r.6 for 103846430	bra-r.6 for 103856126	bra-r.6 for 103850976	vvi-u.5 for 100853593	ppo-u.5 for 18111182	mtr-u.5 for 11420362	ghi-r.1 for 107922305	ghi-r.1 for 107917907	bna-r.1 for 106364608	bna-r.1 for 106385940	bna-r.1 for 106372143	sot-r.1 for 102587654	sot-r.1 for 102591378	cit-r.1 for 102610058	nta-r.1 for 107815569	nta-r.1 for 107831583	nta-r.1 for 107828233

Ortholog

Ortholog ID: 4859

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

50S ribosomal protein L27

uncharacterized LOC4335476

uncharacterized LOC4345523

uncharacterized LOC9271228

50S ribosomal protein L27

50S ribosomal protein L27-like

50S ribosomal protein L27

Ribosomal protein L27 family protein

50S ribosomal protein L27

50S ribosomal protein L27-like

uncharacterized LOC101251545

uncharacterized LOC101257990

50S ribosomal protein L27

uncharacterized LOC100853593

uncharacterized LOC18111182

50S ribosomal protein L27

50S ribosomal protein L27-like

uncharacterized LOC102610058

uncharacterized LOC107831583

uncharacterized LOC107828233

uncharacterized LOC107774209

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	6
sbi03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	6
sbi01210	2-Oxocarboxylic acid metabolism	2
sbi00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	4
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	6
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00190	Oxidative phosphorylation	5
osa03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6
tae00220	Arginine biosynthesis	4
tae00240	Pyrimidine metabolism	4
tae00250	Alanine, aspartate and glutamate metabolism	4
tae01240	Biosynthesis of cofactors	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	9
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae01230	Biosynthesis of amino acids	4
tae03010	Ribosome	4
tae00340	Histidine metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00190	Oxidative phosphorylation	4
hvu03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	4
bdi03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03060	Protein export	3
ath04130	SNARE interactions in vesicular transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma03050	Proteasome	4
gma03040	Spliceosome	3
gma03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6
sly00300	Lysine biosynthesis	2
sly01230	Biosynthesis of amino acids	2
sly00280	Valine, leucine and isoleucine degradation	2
sly00410	beta-Alanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	5
sly03020	RNA polymerase	3
sly03420	Nucleotide excision repair	3
sly03010	Ribosome	2
sly03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	4
bra00190	Oxidative phosphorylation	3
bra03018	RNA degradation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	9
bra00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	7
ppo03018	RNA degradation	2
ppo03040	Spliceosome	2
ppo00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	11

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	5
ghi03010	Ribosome	2
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00190	Oxidative phosphorylation	5
ghi03010	Ribosome	3
ghi00230	Purine metabolism	2
ghi01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	3
sot03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	4
nta03018	RNA degradation	3
nta03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta03040	Spliceosome	4
nta03018	RNA degradation	3
nta00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	4
nta03018	RNA degradation	3
nta03040	Spliceosome	3

Expression

Expression pattern

Entrez Gene ID^*

8067522

8071153

101027115

4335476

4345523

9271228

123069505

123049305

123045218

123426443

100846430

816196

831374

100817864

100782419

101251545

101257990

103846430

103856126

103850976

100853593

18111182

11420362

107922305

107917907

106385940

106372143

106431869

102587654

102591378

102610058

107831583

107828233

107774209

The preparation time of this page was 0.4 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	2	1	3	3	1	1	2	2	2	3	1	1	1	2	3	2	1	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8067522 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8067522 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**