ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8068601	metalloendoproteinase 2-MMP
sbi-r.1	8058083	metalloendoproteinase 1-MMP
sbi-r.1	8061483	metalloendoproteinase 2-MMP
zma-u.5	100285384	metalloendoproteinase 1
zma-u.5	100274259	Metalloendoproteinase 5-MMP
zma-u.5	103637649	metalloendoproteinase 1-MMP
osa-u.5	9270797	metalloendoproteinase 2-MMP
tae-r.2	123181704	metalloendoproteinase 1-MMP
tae-r.2	123138275	metalloendoproteinase 3-MMP
tae-r.2	123149168	metalloendoproteinase 2-MMP
hvu-r.1	123449985	metalloendoproteinase 1-MMP-like
hvu-r.1	123439670	metalloendoproteinase 1-MMP-like
hvu-r.1	123413262	metalloendoproteinase 2-MMP-like
bdi-r.1	100828046	metalloendoproteinase 3-MMP
bdi-r.1	100840393	metalloendoproteinase 4-MMP
bdi-r.1	100844905	metalloendoproteinase 1-MMP
ath-u.5	AT1G24140	Matrixin family protein
gma-u.5	SMEP1	metalloproteinase
sly-u.5	MMP1	matrix metalloproteinases protein 3
sly-u.5	101251805	metalloendoproteinase 4-MMP
bra-r.6	103860876	metalloendoproteinase 1-MMP
bra-r.6	103866858	metalloendoproteinase 4-MMP
mtr-u.5	11410103	metalloendoproteinase 1
mtr-u.5	11436485	metalloendoproteinase 1-MMP
mtr-u.5	11442232	metalloendoproteinase 4-MMP
ghi-r.1	107922924	metalloendoproteinase 4-MMP
ghi-r.1	107915776	metalloendoproteinase 5-MMP
ghi-r.1	107912216	metalloendoproteinase 4-MMP
bna-r.1	106381800	metalloendoproteinase 3-MMP
bna-r.1	111199279	metalloendoproteinase 2-MMP-like
bna-r.1	106416425	metalloendoproteinase 5-MMP-like
sot-r.1	102592086	metalloendoproteinase 3-MMP-like
cit-r.1	102627001	metalloendoproteinase 3-MMP-like
nta-r.1	107814048	metalloendoproteinase 2-MMP
nta-r.1	107782587	metalloendoproteinase 4-MMP-like
nta-r.1	107776901	metalloendoproteinase 1-MMP-like
cre-r.1	CHLRE_14g609202v5	uncharacterized protein

Top 50 coexpressed genes to 8068601 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8068601 (sbi-r.1 coexpression data)

CoexMap"8068601"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0030574 [list] [network] collagen catabolic process	(3 genes)	IEA
GO:0030198 [list] [network] extracellular matrix organization	(13 genes)	IEA
GO:0006508 [list] [network] proteolysis	(765 genes)	IEA

GO CC

GO:0031012 [list] [network] extracellular matrix

(3 genes)

IEA

GO MF

GO:0004222 [list] [network] metalloendopeptidase activity	(44 genes)	IEA
GO:0008270 [list] [network] zinc ion binding	(824 genes)	IEA

Protein

XP_002452573.1 [sequence] [blastp]

Subcellular
localization
wolf

extr 4, cyto 1, pero 1, cyto_pero 1, E.R. 1, E.R._plas 1

(predict for XP_002452573.1)

Subcellular
localization
TargetP

scret 9

(predict for XP_002452573.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8068601	sbi-r.1 for 8058083	sbi-r.1 for 8061483	zma-u.5 for 100285384	zma-u.5 for 100274259	zma-u.5 for 103637649	osa-u.5 for 9270797	tae-r.2 for 123181704	tae-r.2 for 123138275	tae-r.2 for 123149168	hvu-r.1 for 123449985	hvu-r.1 for 123439670	hvu-r.1 for 123413262	bdi-r.1 for 100828046	bdi-r.1 for 100840393	bdi-r.1 for 100844905	ath-u.5 for AT1G24140	gma-u.5 for SMEP1	sly-u.5 for MMP1	sly-u.5 for 101251805	bra-r.6 for 103860876	bra-r.6 for 103866858	mtr-u.5 for 11410103	mtr-u.5 for 11436485	mtr-u.5 for 11442232	ghi-r.1 for 107922924	ghi-r.1 for 107915776	ghi-r.1 for 107912216	bna-r.1 for 106381800	bna-r.1 for 111199279	bna-r.1 for 106416425	sot-r.1 for 102592086	cit-r.1 for 102627001	nta-r.1 for 107814048	nta-r.1 for 107782587	nta-r.1 for 107776901	cre-r.1 for CHLRE_14g609202v5

Ortholog

Ortholog ID: 384

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

ppo

mtr

ghi

sot

cit

nta

cre

Symbol

MMP

SMEP1

LOC100782143

MMP1

MMP2

Function^*

metalloendoproteinase 2-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 1

Metalloendoproteinase 5-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 4-MMP

metalloendoproteinase 1-MMP-like

metalloendoproteinase 4-MMP

metalloendoproteinase 1-MMP-like

metalloendoproteinase 2-MMP-like

metalloendoproteinase 3-MMP-like

metalloendoproteinase 3-MMP

metalloendoproteinase 1-MMP

metalloendoproteinase 3-MMP

Matrixin family protein

matrix metalloproteinase

metalloproteinase

metalloendoproteinase 2-MMP

matrix metalloproteinases protein 3

matrix metalloproteinase 2

metalloendoproteinase 5-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 1

metalloendoproteinase 4-MMP

metalloendoproteinase 2-MMP

metalloendoproteinase 1

metalloendoproteinase 5-MMP

metalloendoproteinase 4-MMP

metalloendoproteinase 2-MMP-like

metalloendoproteinase 3-MMP-like

metalloendoproteinase 4-MMP

metalloendoproteinase 3-MMP

metalloendoproteinase 1-MMP-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00520	Amino sugar and nucleotide sugar metabolism	3
tae01250	Biosynthesis of nucleotide sugars	3
tae03060	Protein export	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04016	MAPK signaling pathway - plant	3
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00908	Zeatin biosynthesis	4
bdi04075	Plant hormone signal transduction	2
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00561	Glycerolipid metabolism	2
ath00564	Glycerophospholipid metabolism	2
ath02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04016	MAPK signaling pathway - plant	2
gma04075	Plant hormone signal transduction	2
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04626	Plant-pathogen interaction	4
sly04016	MAPK signaling pathway - plant	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00561	Glycerolipid metabolism	3
bra00564	Glycerophospholipid metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00500	Starch and sucrose metabolism	5
ghi04016	MAPK signaling pathway - plant	4
ghi04075	Plant hormone signal transduction	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot01240	Biosynthesis of cofactors	2
sot00360	Phenylalanine metabolism	2
sot00940	Phenylpropanoid biosynthesis	2
sot04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04626	Plant-pathogen interaction	3
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04142	Lysosome	2
nta04626	Plant-pathogen interaction	2

Expression

Expression pattern

Entrez Gene ID^*

8068601

8058083

8061483

100285384

100274259

103637649

9270797

123099138

123052586

123106099

123439670

123413262

123402518

100828046

100844905

100826984

839026

842291

843353

547880

100782143

101055590

101260125

103838570

103830895

103831562

18104342

11442232

11409998

25494610

107915776

107912216

107945266

102592086

102591586

102616119

107776901

107760134

5726898

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Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	mtr	ghi	bna	sot	cit	nta	cre	vvi	ppo
Paralog	3	3	1	3	3	3	1	1	2	2	3	3	3	1	1	3	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8068601 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8068601 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**