ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8069463	ras GTPase-activating protein-binding protein 1
sbi-r.1	8056061	ras GTPase-activating protein-binding protein 1
sbi-r.1	8066039	ras GTPase-activating protein-binding protein 1
sbi-r.1	110432942	ras GTPase-activating protein-binding protein 2
zma-u.5	100216804	RNA-binding protein-like protein
zma-u.5	100382927	uncharacterized LOC100382927
zma-u.5	100382436	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain
osa-u.5	4328199	nuclear transport factor 2
osa-u.5	4343835	nuclear transport factor 2
osa-u.5	4335600	nuclear transport factor 2
tae-r.2	123164709	nuclear transport factor 2
tae-r.2	123045260	nuclear transport factor 2
hvu-r.1	123445065	nuclear transport factor 2-like
hvu-r.1	123406987	nuclear transport factor 2
hvu-r.1	123429718	nuclear transport factor 2-like
bdi-r.1	100840697	ras GTPase-activating protein-binding protein 1
bdi-r.1	100845318	ras GTPase-activating protein-binding protein 1
bdi-r.1	100842774	ras GTPase-activating protein-binding protein 1
ath-u.5	AT2G03640	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
ath-u.5	AT3G25150	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
ath-u.5	AT5G43960	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
gma-u.5	100816288	nuclear transport factor 2
gma-u.5	100816544	nuclear transport factor 2
gma-u.5	100817177	nuclear transport factor 2
sly-u.5	101255859	nuclear transport factor 2-like
sly-u.5	101255597	nuclear transport factor 2
sly-u.5	101250028	nuclear transport factor 2
bra-r.6	103875395	nuclear transport factor 2
bra-r.6	103827940	nuclear transport factor 2
bra-r.6	103828575	nuclear transport factor 2
vvi-u.5	100264206	nuclear transport factor 2
vvi-u.5	100261382	nuclear transport factor 2
vvi-u.5	100258271	nuclear transport factor 2
ppo-u.5	7468147	nuclear transport factor 2
ppo-u.5	7467902	nuclear transport factor 2
mtr-u.5	11446183	nuclear transport factor 2
mtr-u.5	11446469	nuclear transport factor 2
mtr-u.5	11431097	nuclear transport factor 2
ghi-r.1	107912111	nuclear transport factor 2
ghi-r.1	107912550	nuclear transport factor 2
ghi-r.1	107914961	nuclear transport factor 2
bna-r.1	111210019	nuclear transport factor 2-like
bna-r.1	106418150	nuclear transport factor 2
bna-r.1	106410936	nuclear transport factor 2
sot-r.1	102582243	putative G3BP-like protein
sot-r.1	102601705	ras GTPase-activating protein-binding protein 2-like
sot-r.1	102594129	putative G3BP-like protein
cit-r.1	102624651	nuclear transport factor 2-like
cit-r.1	102609497	nuclear transport factor 2-like
nta-r.1	107774881	nuclear transport factor 2
nta-r.1	107781059	nuclear transport factor 2-like
nta-r.1	107783662	nuclear transport factor 2
cre-r.1	CHLRE_02g092400v5	uncharacterized protein

Top 50 coexpressed genes to 8069463 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8069463 (sbi-r.1 coexpression data)

CoexMap"8069463"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:1990904 [list] [network] ribonucleoprotein complex	(562 genes)	IEA
GO:0005829 [list] [network] cytosol	(856 genes)	IEA

GO MF

GO:0003729 [list] [network] mRNA binding

(267 genes)

IEA

Protein

XP_002447622.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, mito 2, pero 2, cyto_nucl 2

(predict for XP_002447622.1)

Subcellular
localization
TargetP

chlo 8

(predict for XP_002447622.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8069463	sbi-r.1 for 8056061	sbi-r.1 for 8066039	sbi-r.1 for 110432942	zma-u.5 for 100216804	zma-u.5 for 100382927	zma-u.5 for 100382436	osa-u.5 for 4328199	osa-u.5 for 4343835	osa-u.5 for 4335600	tae-r.2 for 123164709	tae-r.2 for 123045260	hvu-r.1 for 123445065	hvu-r.1 for 123406987	hvu-r.1 for 123429718	bdi-r.1 for 100840697	bdi-r.1 for 100845318	bdi-r.1 for 100842774	ath-u.5 for AT2G03640	ath-u.5 for AT3G25150	ath-u.5 for AT5G43960	gma-u.5 for 100816288	gma-u.5 for 100816544	gma-u.5 for 100817177	sly-u.5 for 101255859	sly-u.5 for 101255597	sly-u.5 for 101250028	bra-r.6 for 103875395	bra-r.6 for 103827940	bra-r.6 for 103828575	vvi-u.5 for 100264206	vvi-u.5 for 100261382	vvi-u.5 for 100258271	ppo-u.5 for 7468147	ppo-u.5 for 7467902	mtr-u.5 for 11446183	mtr-u.5 for 11446469	mtr-u.5 for 11431097	ghi-r.1 for 107912111	ghi-r.1 for 107912550	ghi-r.1 for 107914961	bna-r.1 for 111210019	bna-r.1 for 106418150	bna-r.1 for 106410936	sot-r.1 for 102582243	sot-r.1 for 102601705	sot-r.1 for 102594129	cit-r.1 for 102624651	cit-r.1 for 102609497	nta-r.1 for 107774881	nta-r.1 for 107781059	nta-r.1 for 107783662	cre-r.1 for CHLRE_02g092400v5

Ortholog

Ortholog ID: 346

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

ras GTPase-activating protein-binding protein 1

ras GTPase-activating protein-binding protein 2

uncharacterized LOC100282288

uncharacterized LOC103636080

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

nuclear transport factor 2

nuclear transport factor 2-like

nuclear transport factor 2

nuclear transport factor 2-like

ras GTPase-activating protein-binding protein 1

putative G3BP-like protein

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein

nuclear transport factor 2

putative G3BP-like protein-like

nuclear transport factor 2

nuclear transport factor 2-like

nuclear transport factor 2

nuclear transport factor 2-like

nuclear transport factor 2

putative G3BP-like protein

ras GTPase-activating protein-binding protein 2-like

nuclear transport factor 2-like

nuclear transport factor 2

nuclear transport factor 2-like

nuclear transport factor 2

nuclear transport factor 2-like

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00020	Citrate cycle (TCA cycle)	2
osa01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00970	Aminoacyl-tRNA biosynthesis	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00100	Steroid biosynthesis	3
tae03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03013	Nucleocytoplasmic transport	3
tae04145	Phagosome	2
tae04517	IgSF CAM signaling	2
tae04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03013	Nucleocytoplasmic transport	3
hvu03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03060	Protein export	2
hvu04141	Protein processing in endoplasmic reticulum	2
hvu03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04144	Endocytosis	4
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	5
bdi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	5
bdi03018	RNA degradation	2
bdi03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2
ath03015	mRNA surveillance pathway	2
ath03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03410	Base excision repair	3
ath03030	DNA replication	2
ath03420	Nucleotide excision repair	2
ath03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	2
gma00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	2
gma03013	Nucleocytoplasmic transport	2
gma03250	Viral life cycle - HIV-1	2
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03015	mRNA surveillance pathway	3
sly03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly00100	Steroid biosynthesis	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	4
sly00510	N-Glycan biosynthesis	3
sly00513	Various types of N-glycan biosynthesis	2
sly04144	Endocytosis	2
sly05100	Bacterial invasion of epithelial cells	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi01240	Biosynthesis of cofactors	2
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03013	Nucleocytoplasmic transport	5
vvi00970	Aminoacyl-tRNA biosynthesis	2
vvi03008	Ribosome biogenesis in eukaryotes	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04142	Lysosome	2
ppo04145	Phagosome	2
ppo04517	IgSF CAM signaling	2
ppo04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00940	Phenylpropanoid biosynthesis	2
bna03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	2
sot00190	Oxidative phosphorylation	2
sot03015	mRNA surveillance pathway	2
sot03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00190	Oxidative phosphorylation	2
sot04142	Lysosome	2
sot04145	Phagosome	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04144	Endocytosis	9
nta04130	SNARE interactions in vesicular transport	2
nta04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre04141	Protein processing in endoplasmic reticulum	4
cre00970	Aminoacyl-tRNA biosynthesis	3
cre03060	Protein export	2

Expression

Expression pattern

Entrez Gene ID^*

8069463

8066039

110432942

100282288

103636080

100193813

4328199

4343835

4333125

123164709

123053095

123189003

123445065

123406987

123429718

100845318

100842774

100824546

814893

822106

837933

100817177

100783698

100795457

101245491

101259102

101265248

103875395

103854928

103872075

100264206

100261382

100249710

7468147

7467902

7471164

11446183

25493895

25498406

107932166

107961363

107886607

111210019

106439954

102594129

102580874

102583564

102609497

102614075

102628136

107788677

107813212

107829551

5727499

The preparation time of this page was 0.4 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	2	3	3	3	3	3	3	3	2	3	3	3	3	2	3	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8069463 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8069463 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**