ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-u.5	AT2G03640	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
ath-r.7	AT2G03640	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
ath-e.2	AT2G03640	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
ath-u.5	AT3G25150	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
ath-u.5	AT5G43960	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
ath-u.5	AT5G60980	Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein
bra-r.6	103828575	nuclear transport factor 2
bra-r.6	103872075	nuclear transport factor 2
bra-r.6	103860560	nuclear transport factor 2
bna-r.1	106439954	nuclear transport factor 2
bna-r.1	106418150	nuclear transport factor 2
bna-r.1	106410936	nuclear transport factor 2
ghi-r.1	107912111	nuclear transport factor 2
ghi-r.1	107912550	nuclear transport factor 2
ghi-r.1	107914961	nuclear transport factor 2
cit-r.1	102614075	nuclear transport factor 2
cit-r.1	102613965	nuclear transport factor 2
cit-r.1	102609497	nuclear transport factor 2-like
gma-u.5	100812165	nuclear transport factor 2
gma-u.5	100816288	nuclear transport factor 2
gma-u.5	100816544	nuclear transport factor 2
vvi-u.5	100264206	nuclear transport factor 2
vvi-u.5	100261382	nuclear transport factor 2
vvi-u.5	100258271	nuclear transport factor 2
ppo-u.5	7468147	nuclear transport factor 2
ppo-u.5	7467902	nuclear transport factor 2
mtr-u.5	11446183	nuclear transport factor 2
mtr-u.5	11446469	nuclear transport factor 2
mtr-u.5	11431097	nuclear transport factor 2
sly-u.5	101255859	nuclear transport factor 2-like
sly-u.5	101250028	nuclear transport factor 2
sot-r.1	102580874	putative G3BP-like protein
sot-r.1	102583564	ras GTPase-activating protein-binding protein 2-like
sot-r.1	102594129	putative G3BP-like protein
nta-r.1	107774881	nuclear transport factor 2
nta-r.1	107762936	nuclear transport factor 2-like
nta-r.1	107781059	nuclear transport factor 2-like
osa-u.5	4329411	nuclear transport factor 2
osa-u.5	4333125	nuclear transport factor 2
osa-u.5	4335600	nuclear transport factor 2
zma-u.5	100282288	uncharacterized LOC100282288
zma-u.5	103636080	uncharacterized LOC103636080
zma-u.5	100216804	RNA-binding protein-like protein
tae-r.2	123164709	nuclear transport factor 2
tae-r.2	123045260	nuclear transport factor 2
hvu-r.1	123445065	nuclear transport factor 2-like
hvu-r.1	123406987	nuclear transport factor 2
hvu-r.1	123426482	nuclear transport factor 2-like
sbi-r.1	110432942	ras GTPase-activating protein-binding protein 2
sbi-r.1	8056061	ras GTPase-activating protein-binding protein 1
sbi-r.1	8066039	ras GTPase-activating protein-binding protein 1
bdi-r.1	100844531	putative G3BP-like protein
bdi-r.1	100842774	ras GTPase-activating protein-binding protein 1
bdi-r.1	100840697	ras GTPase-activating protein-binding protein 1
cre-r.1	CHLRE_02g092400v5	uncharacterized protein

Top 50 coexpressed genes to AT2G03640 (ath-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT2G03640 (ath-u.5 coexpression data)

CoexMap"814893"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0034063 [list] [network] stress granule assembly

(9 genes)

IDA

GO CC

GO:0005739 [list] [network] mitochondrion	(4244 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	IDA
GO:0005737 [list] [network] cytoplasm	(14000 genes)	IDA ISM

GO MF

GO:0003729 [list] [network] mRNA binding

(1514 genes)

HDA IDA

Protein

NP_001030964.1 [sequence] [blastp]
NP_001189507.1 [sequence] [blastp]
NP_001318193.1 [sequence] [blastp]
NP_001323460.1 [sequence] [blastp]
NP_178462.3 [sequence] [blastp]

Subcellular
localization
wolf

nucl 9, cyto 1, golg 1	(predict for NP_001030964.1)
nucl 5, chlo 2, cyto 1, cysk 1, golg 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1	(predict for NP_001189507.1)
nucl 9, plas 1, golg 1, golg_plas 1	(predict for NP_001318193.1)
nucl 9, plas 1, golg 1, golg_plas 1	(predict for NP_001323460.1)
nucl 9, plas 1, golg 1, golg_plas 1	(predict for NP_178462.3)

Subcellular
localization
TargetP

other 8	(predict for NP_001030964.1)
other 8	(predict for NP_001189507.1)
other 8	(predict for NP_001318193.1)
other 8	(predict for NP_001323460.1)
other 8	(predict for NP_178462.3)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-u.5 for AT2G03640	ath-r.7 for AT2G03640	ath-e.2 for AT2G03640	ath-u.5 for AT3G25150	ath-u.5 for AT5G43960	ath-u.5 for AT5G60980	bra-r.6 for 103828575	bra-r.6 for 103872075	bra-r.6 for 103860560	bna-r.1 for 106439954	bna-r.1 for 106418150	bna-r.1 for 106410936	ghi-r.1 for 107912111	ghi-r.1 for 107912550	ghi-r.1 for 107914961	cit-r.1 for 102614075	cit-r.1 for 102613965	cit-r.1 for 102609497	gma-u.5 for 100812165	gma-u.5 for 100816288	gma-u.5 for 100816544	vvi-u.5 for 100264206	vvi-u.5 for 100261382	vvi-u.5 for 100258271	ppo-u.5 for 7468147	ppo-u.5 for 7467902	mtr-u.5 for 11446183	mtr-u.5 for 11446469	mtr-u.5 for 11431097	sly-u.5 for 101255859	sly-u.5 for 101250028	sot-r.1 for 102580874	sot-r.1 for 102583564	sot-r.1 for 102594129	nta-r.1 for 107774881	nta-r.1 for 107762936	nta-r.1 for 107781059	osa-u.5 for 4329411	osa-u.5 for 4333125	osa-u.5 for 4335600	zma-u.5 for 100282288	zma-u.5 for 103636080	zma-u.5 for 100216804	tae-r.2 for 123164709	tae-r.2 for 123045260	hvu-r.1 for 123445065	hvu-r.1 for 123406987	hvu-r.1 for 123426482	sbi-r.1 for 110432942	sbi-r.1 for 8056061	sbi-r.1 for 8066039	bdi-r.1 for 100844531	bdi-r.1 for 100842774	bdi-r.1 for 100840697	cre-r.1 for CHLRE_02g092400v5

Ortholog

Ortholog ID: 346

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein

nuclear transport factor 2