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Orthologous genes in OrthoFinder**

Species Gene Description
 sbi-r.1   8073437   30S ribosomal protein 3, chloroplastic 
 zma-u.5   100282135   plastid-specific 30S ribosomal protein 3 
 zma-u.5   100193993   30S ribosomal protein 3, chloroplastic-like 
 osa-u.5   4336056   small ribosomal subunit protein cS23 
 tae-r.2   123189440   30S ribosomal protein 3, chloroplastic 
 tae-r.2   123045673   30S ribosomal protein 3, chloroplastic 
 tae-r.2   123053547   30S ribosomal protein 3, chloroplastic 
 hvu-r.1   123426921   30S ribosomal protein 3, chloroplastic 
 bdi-r.1   100822916   30S ribosomal protein 3, chloroplastic 
 ath-u.5   PSRP3/2   Ribosomal protein PSRP-3/Ycf65 
 ath-u.5   PSRP3/1   Ribosomal protein PSRP-3/Ycf65 
 gma-u.5   100306266   uncharacterized LOC100306266 
 sly-u.5   101258952   small ribosomal subunit protein cS23 
 sly-u.5   101255964   small ribosomal subunit protein cS23-like 
 bra-r.6   103852509   30S ribosomal protein 3-1, chloroplastic 
 bra-r.6   103831271   30S ribosomal protein 3-1, chloroplastic 
 bra-r.6   103830961   30S ribosomal protein 3-1, chloroplastic 
 vvi-u.5   100254839   small ribosomal subunit protein cS23 
 ppo-u.5   7489359   30S ribosomal protein 3-1, chloroplastic 
 ppo-u.5   7456818   30S ribosomal protein 3, chloroplastic 
 ppo-u.5   7488345   30S ribosomal protein 3-1, chloroplastic 
 mtr-u.5   11435754   30S ribosomal protein 3, chloroplastic 
 ghi-r.1   107916675   30S ribosomal protein 3, chloroplastic 
 ghi-r.1   107912723   30S ribosomal protein 3, chloroplastic 
 ghi-r.1   107887169   30S ribosomal protein 3-1, chloroplastic 
 bna-r.1   125585847   30S ribosomal protein 3-1, chloroplastic-like 
 bna-r.1   106424753   30S ribosomal protein 3-2, chloroplastic 
 bna-r.1   106408336   30S ribosomal protein 3-1, chloroplastic-like 
 sot-r.1   102580996   30S ribosomal protein 3, chloroplastic-like 
 sot-r.1   102591743   30S ribosomal protein 3, chloroplastic-like 
 cit-r.1   102629405   30S ribosomal protein 3-1, chloroplastic 
 cit-r.1   102615427   30S ribosomal protein 3, chloroplastic 
 nta-r.1   107809317   small ribosomal subunit protein cS23z-like 
 nta-r.1   107796488   small ribosomal subunit protein cS23 
 nta-r.1   107793852   small ribosomal subunit protein cS23-like 
 cre-r.1   CHLRE_02g083950v5   uncharacterized protein 

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Top 50 coexpressed genes to 8073437 (sbi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 8073437 (sbi-r.1 coexpression data)

CoexMap"8073437"


sbiLOC8073437 | Entrez gene ID : 8073437      
Species sbi zma osa tae hvu bdi ath gma sly bra vvi ppo mtr ghi bna sot cit nta cre
Paralog 1 2 1 3 1 1 2 1 2 3 1 3 1 3 3 2 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG sbi03010 [list] [network] Ribosome (360 genes)
GO BP
GO:0006412 [list] [network] translation  (459 genes)  IEA  
GO CC
GO:0005840 [list] [network] ribosome  (326 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (320 genes)  IEA  
Protein XP_002446621.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for XP_002446621.1)
Subcellular
localization
TargetP
chlo 9  (predict for XP_002446621.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

sbi-r.1
for
8073437
zma-u.5
for
100282135
zma-u.5
for
100193993
osa-u.5
for
4336056
tae-r.2
for
123189440
tae-r.2
for
123045673
tae-r.2
for
123053547
hvu-r.1
for
123426921
bdi-r.1
for
100822916
ath-u.5
for
PSRP3/2
ath-u.5
for
PSRP3/1
gma-u.5
for
100306266
sly-u.5
for
101258952
sly-u.5
for
101255964
bra-r.6
for
103852509
bra-r.6
for
103831271
bra-r.6
for
103830961
vvi-u.5
for
100254839
ppo-u.5
for
7489359
ppo-u.5
for
7456818
ppo-u.5
for
7488345
mtr-u.5
for
11435754
ghi-r.1
for
107916675
ghi-r.1
for
107912723
ghi-r.1
for
107887169
bna-r.1
for
125585847
bna-r.1
for
106424753
bna-r.1
for
106408336
sot-r.1
for
102580996
sot-r.1
for
102591743
cit-r.1
for
102629405
cit-r.1
for
102615427
nta-r.1
for
107809317
nta-r.1
for
107796488
nta-r.1
for
107793852
cre-r.1
for
CHLRE_02g083950v5


Ortholog ID: 4288
Species sbi zma zma osa tae tae tae hvu bdi ath ath gma sly sly bra bra bra vvi ppo ppo ppo mtr ghi ghi ghi bna bna bna sot sot cit cit nta nta nta cre
Symbol LOC8073437 LOC100282135 LOC100193993 LOC4336056 LOC123189440 LOC123045673 LOC123053547 LOC123426921 LOC100822916 PSRP3/2 PSRP3/1 LOC100306266 LOC101258952 LOC101255964 LOC103852509 LOC103831271 LOC103830961 LOC100254839 LOC7489359 LOC7456818 LOC7488345 LOC11435754 LOC107912723 LOC107887169 LOC121203073 LOC106408336 LOC106393236 LOC106372176 LOC102580996 LOC102591743 LOC102629405 LOC102615427 LOC107809317 LOC107796488 LOC107762951 CHLRE_02g083950v5
Function* 30S ribosomal protein 3, chloroplastic plastid-specific 30S ribosomal protein 3 30S ribosomal protein 3, chloroplastic-like small ribosomal subunit protein cS23 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic Ribosomal protein PSRP-3/Ycf65 Ribosomal protein PSRP-3/Ycf65 uncharacterized LOC100306266 small ribosomal subunit protein cS23 small ribosomal subunit protein cS23-like 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3-1, chloroplastic small ribosomal subunit protein cS23 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3-1, chloroplastic-like 30S ribosomal protein 3-1, chloroplastic-like 30S ribosomal protein 3-2, chloroplastic-like 30S ribosomal protein 3, chloroplastic-like 30S ribosomal protein 3, chloroplastic-like 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3, chloroplastic small ribosomal subunit protein cS23z-like small ribosomal subunit protein cS23 small ribosomal subunit protein cS23 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 5
ppo01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit04141 Protein processing in endoplasmic reticulum 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta01200 Carbon metabolism 7
nta00630 Glyoxylate and dicarboxylate metabolism 5
nta00260 Glycine, serine and threonine metabolism 4
nta00670 One carbon pool by folate 4
nta00785 Lipoic acid metabolism 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 7
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 8073437 100282135 100193993 4336056 123189440 123045673 123053547 123426921 100822916 831432 843189 100306266 101258952 101255964 103852509 103831271 103830961 100254839 7489359 7456818 7488345 11435754 107912723 107887169 121203073 106408336 106393236 106372176 102580996 102591743 102629405 102615427 107809317 107796488 107762951 5727353
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