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Orthologous genes in OrthoFinder**

Species Gene Description
 ppo-u.5   7488345   30S ribosomal protein 3-1, chloroplastic 
 ppo-r.4   7488345   30S ribosomal protein 3-1, chloroplastic 
 ppo-m.4   7488345   30S ribosomal protein 3-1, chloroplastic 
 ppo-u.5   7456818   30S ribosomal protein 3, chloroplastic 
 ppo-u.5   7489359   30S ribosomal protein 3-1, chloroplastic 
 gma-u.5   100306266   uncharacterized LOC100306266 
 mtr-u.5   11435754   30S ribosomal protein 3, chloroplastic 
 ath-u.5   PSRP3/2   Ribosomal protein PSRP-3/Ycf65 
 ath-u.5   PSRP3/1   Ribosomal protein PSRP-3/Ycf65 
 vvi-u.5   100254839   small ribosomal subunit protein cS23 
 sly-u.5   101258952   small ribosomal subunit protein cS23 
 sly-u.5   101255964   small ribosomal subunit protein cS23-like 
 osa-u.5   4336056   small ribosomal subunit protein cS23 
 zma-u.5   100282135   plastid-specific 30S ribosomal protein 3 
 zma-u.5   100193993   30S ribosomal protein 3, chloroplastic-like 

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Top 50 coexpressed genes to 7488345 (ppo-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 7488345 (ppo-u.5 coexpression data)

CoexMap"7488345"


ppoLOC7488345 | Entrez gene ID : 7488345    
Species ppo gma mtr ath vvi sly osa zma sbi nta bra cre hvu cit bdi sot tae bna ghi
Paralog 5 1 1 2 1 2 1 2 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG pop03010 [list] [network] Ribosome (698 genes)
GO BP
GO:0006412 [list] [network] translation  (598 genes)  IEA  
GO CC
GO:0005840 [list] [network] ribosome  (453 genes)  IEA  
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (439 genes)  IEA  
Protein XP_002311451.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 9  (predict for XP_002311451.2)
Subcellular
localization
TargetP
chlo 7  (predict for XP_002311451.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ppo-u.5
for
7488345

.
ppo-r.4
for
7488345

.
ppo-m.4
for
7488345

.
ppo-u.5
for
7456818

.
ppo-u.5
for
7489359

.
gma-u.5
for
100306266

.
mtr-u.5
for
11435754

.
ath-u.5
for
PSRP3/2

.
ath-u.5
for
PSRP3/1

.
vvi-u.5
for
100254839

.
sly-u.5
for
101258952

.
sly-u.5
for
101255964

.
osa-u.5
for
4336056

.
zma-u.5
for
100282135

.
zma-u.5
for
100193993

.


Ortholog ID: 4288
Species ath ath gma sly sly osa zma zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna bna cre sbi sot sot cit cit bdi nta nta
Symbol PSRP3/1 PSRP3/2 LOC100306266 LOC101255964 LOC101258952 LOC4336056 LOC100282135 LOC100193993 LOC103830961 LOC103852509 LOC100254839 LOC7456818 LOC7489359 LOC11435754 LOC123045673 LOC123189440 LOC123426921 LOC107912723 LOC107887169 LOC106372176 LOC106408336 CHLRE_02g083950v5 LOC8073437 LOC102580996 LOC102591743 LOC102629405 LOC102615427 LOC100822916 LOC107762951 LOC107796488
Function* Ribosomal protein PSRP-3/Ycf65 Ribosomal protein PSRP-3/Ycf65 uncharacterized LOC100306266 small ribosomal subunit protein cS23-like small ribosomal subunit protein cS23 small ribosomal subunit protein cS23 plastid-specific 30S ribosomal protein 3 30S ribosomal protein 3, chloroplastic-like 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3-1, chloroplastic small ribosomal subunit protein cS23 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3-2, chloroplastic-like 30S ribosomal protein 3-1, chloroplastic-like uncharacterized protein 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic-like 30S ribosomal protein 3, chloroplastic-like 30S ribosomal protein 3-1, chloroplastic 30S ribosomal protein 3, chloroplastic 30S ribosomal protein 3, chloroplastic small ribosomal subunit protein cS23 small ribosomal subunit protein cS23
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
ath00860 Porphyrin metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 12
zma00195 Photosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
bra00630 Glyoxylate and dicarboxylate metabolism 2
bra01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 4
ghi00860 Porphyrin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
bna03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 8
sot03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00195 Photosynthesis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
cit04141 Protein processing in endoplasmic reticulum 2
cit03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 843189 831432 100306266 101255964 101258952 4336056 100282135 100193993 103830961 103852509 100254839 7456818 7489359 11435754 123045673 123189440 123426921 107912723 107887169 106372176 106408336 5727353 8073437 102580996 102591743 102629405 102615427 100822916 107762951 107796488
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