ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8077752	ribosomal RNA small subunit methyltransferase nep-1
sbi-r.1	8076240	ribosomal RNA small subunit methyltransferase nep-1
zma-u.5	100282562	ribosome biogenesis protein NEP1
osa-u.5	4329057	uncharacterized LOC4329057
hvu-r.1	123403065	ribosomal RNA small subunit methyltransferase nep-1-like
bdi-r.1	100844288	ribosomal RNA small subunit methyltransferase nep-1
ath-u.5	AT3G57000	nucleolar essential protein-like protein
gma-u.5	100788480	ribosomal RNA small subunit methyltransferase NEP1-like
gma-u.5	100778294	ribosomal RNA small subunit methyltransferase NEP1-like
sly-u.5	101260019	uncharacterized LOC101260019
bra-r.6	103841604	ribosomal RNA small subunit methyltransferase NEP1
vvi-u.5	100258999	uncharacterized LOC100258999
vvi-u.5	100260745	uncharacterized LOC100260745
ppo-u.5	7464104	uncharacterized LOC7464104
ppo-u.5	7473563	uncharacterized LOC7473563
mtr-u.5	11430617	ribosomal RNA small subunit methyltransferase nep-1
mtr-u.5	11421258	ribosomal RNA small subunit methyltransferase NEP1
ghi-r.1	121210907	ribosomal RNA small subunit methyltransferase nep-1
ghi-r.1	107945652	ribosomal RNA small subunit methyltransferase nep-1
ghi-r.1	107948147	ribosomal RNA small subunit methyltransferase nep-1
bna-r.1	106411956	ribosomal RNA small subunit methyltransferase NEP1
bna-r.1	106368034	ribosomal RNA small subunit methyltransferase NEP1-like
sot-r.1	102578568	ribosomal RNA small subunit methyltransferase NEP1
cit-r.1	102606709	uncharacterized LOC102606709
nta-r.1	107767617	uncharacterized LOC107767617
nta-r.1	107808458	uncharacterized LOC107808458
nta-r.1	107808457	uncharacterized LOC107808457
cre-r.1	CHLRE_01g009950v5	uncharacterized protein

Top 50 coexpressed genes to 8077752 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8077752 (sbi-r.1 coexpression data)

CoexMap"8077752"

[Cytoscape]

Annotation

functional annotation

KEGG

sbi03008 [list] [network] Ribosome biogenesis in eukaryotes (91 genes)

GO BP

GO:0070475 [list] [network] rRNA base methylation

(18 genes)

IEA

GO CC

GO:0032040 [list] [network] small-subunit processome	(50 genes)	IEA
GO:0005730 [list] [network] nucleolus	(194 genes)	IEA

GO MF

GO:0070037 [list] [network] rRNA (pseudouridine) methyltransferase activity	(2 genes)	IEA
GO:0019843 [list] [network] rRNA binding	(67 genes)	IEA

Protein

XP_002451973.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 3, chlo 2, chlo_mito 2, mito 1, nucl 1, pero 1, cyto_E.R. 1, cyto_plas 1

(predict for XP_002451973.1)

Subcellular
localization
TargetP

other 6, mito 3

(predict for XP_002451973.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8077752	sbi-r.1 for 8076240	zma-u.5 for 100282562	osa-u.5 for 4329057	hvu-r.1 for 123403065	bdi-r.1 for 100844288	ath-u.5 for AT3G57000	gma-u.5 for 100788480	gma-u.5 for 100778294	sly-u.5 for 101260019	bra-r.6 for 103841604	vvi-u.5 for 100258999	vvi-u.5 for 100260745	ppo-u.5 for 7464104	ppo-u.5 for 7473563	mtr-u.5 for 11430617	mtr-u.5 for 11421258	ghi-r.1 for 121210907	ghi-r.1 for 107945652	ghi-r.1 for 107948147	bna-r.1 for 106411956	bna-r.1 for 106368034	sot-r.1 for 102578568	cit-r.1 for 102606709	nta-r.1 for 107767617	nta-r.1 for 107808458	nta-r.1 for 107808457	cre-r.1 for CHLRE_01g009950v5

Ortholog

Ortholog ID: 5779

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

cre

Symbol

Function^*

ribosomal RNA small subunit methyltransferase nep-1

ribosome biogenesis protein NEP1

uncharacterized LOC4329057

ribosomal RNA small subunit methyltransferase nep-1

ribosomal RNA small subunit methyltransferase nep-1-like

ribosomal RNA small subunit methyltransferase nep-1

nucleolar essential protein-like protein

ribosomal RNA small subunit methyltransferase NEP1-like

uncharacterized LOC101260019

ribosomal RNA small subunit methyltransferase NEP1

uncharacterized LOC100258999

uncharacterized LOC100260745

uncharacterized LOC7464104

uncharacterized LOC7473563

ribosomal RNA small subunit methyltransferase nep-1

ribosomal RNA small subunit methyltransferase NEP1

ribosomal RNA small subunit methyltransferase nep-1

ribosomal RNA small subunit methyltransferase NEP1

ribosomal RNA small subunit methyltransferase NEP1-like

ribosomal RNA small subunit methyltransferase NEP1

uncharacterized LOC102606709

uncharacterized LOC107767617

uncharacterized LOC107808457

uncharacterized LOC107807130

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	4
sbi03050	Proteasome	3
sbi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03050	Proteasome	3
sbi03008	Ribosome biogenesis in eukaryotes	2
sbi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	2
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03008	Ribosome biogenesis in eukaryotes	5
hvu03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03008	Ribosome biogenesis in eukaryotes	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	5
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	4
gma03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03008	Ribosome biogenesis in eukaryotes	5
sly03010	Ribosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03008	Ribosome biogenesis in eukaryotes	3
vvi03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	3
vvi03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	8

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03008	Ribosome biogenesis in eukaryotes	9
ghi00590	Arachidonic acid metabolism	2
ghi00790	Folate biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03008	Ribosome biogenesis in eukaryotes	4
sot03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5
nta03008	Ribosome biogenesis in eukaryotes	5
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	5
nta03008	Ribosome biogenesis in eukaryotes	5
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03008	Ribosome biogenesis in eukaryotes	5
nta03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03008	Ribosome biogenesis in eukaryotes	6

Expression

Expression pattern

Entrez Gene ID^*

8077752

8076240

100282562

4329057

123144707

123137347

123127606

123403065

100844288

824867

100788480

100778294

101260019

103841604

100258999

100260745

7464104

7473563

11430617

11421258

121210907

107945652

107948147

106411956

106368034

102578568

102606709

107767617

107808457

107807130

5725842

The preparation time of this page was 0.1 [sec].


Species	sbi	zma	osa	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre	tae
Paralog	2	1	1	1	1	1	2	1	1	2	2	2	3	2	1	1	3	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8077752 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8077752 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**