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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_01g009950v5   uncharacterized protein 
 ath-u.5   AT3G57000   nucleolar essential protein-like protein 
 gma-u.5   100788480   ribosomal RNA small subunit methyltransferase NEP1-like 
 gma-u.5   100778294   ribosomal RNA small subunit methyltransferase NEP1-like 
 sly-u.5   101260019   uncharacterized LOC101260019 
 osa-u.5   4329057   uncharacterized LOC4329057 
 zma-u.5   100282562   ribosome biogenesis protein NEP1 
 vvi-u.5   100258999   uncharacterized LOC100258999 
 vvi-u.5   100260745   uncharacterized LOC100260745 
 ppo-u.5   7473563   uncharacterized LOC7473563 
 ppo-u.5   7464104   uncharacterized LOC7464104 
 mtr-u.5   11430617   ribosomal RNA small subunit methyltransferase nep-1 
 mtr-u.5   11421258   ribosomal RNA small subunit methyltransferase NEP1 

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Top 50 coexpressed genes to CHLRE_01g009950v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_01g009950v5 (cre-r.1 coexpression data)

CoexMap"5725842"


creCHLRE_01g009950v5 | Entrez gene ID : 5725842      
Species cre ath gma sly osa zma vvi ppo mtr sbi nta bra hvu cit bdi sot tae bna ghi
Paralog 1 1 2 1 1 1 2 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG cre03008 [list] [network] Ribosome biogenesis in eukaryotes (47 genes)
GO BP
GO:0070475 [list] [network] rRNA base methylation  (14 genes)  IEA  
GO CC
GO:0032040 [list] [network] small-subunit processome  (35 genes)  IEA  
GO:0005730 [list] [network] nucleolus  (152 genes)  IEA  
GO MF
GO:0070037 [list] [network] rRNA (pseudouridine) methyltransferase activity  (1 genes)  IEA  
GO:0019843 [list] [network] rRNA binding  (36 genes)  IEA  
Protein XP_001700256.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  nucl 1,  vacu 1,  cysk_nucl 1,  E.R._vacu 1  (predict for XP_001700256.1)
Subcellular
localization
TargetP
other 9  (predict for XP_001700256.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_01g009950v5

.
ath-u.5
for
AT3G57000

.
gma-u.5
for
100788480

.
gma-u.5
for
100778294

.
sly-u.5
for
101260019

.
osa-u.5
for
4329057

.
zma-u.5
for
100282562

.
vvi-u.5
for
100258999

.
vvi-u.5
for
100260745

.
ppo-u.5
for
7473563

.
ppo-u.5
for
7464104

.
mtr-u.5
for
11430617

.
mtr-u.5
for
11421258

.


Ortholog ID: 5779
Species ath gma gma sly osa zma bra vvi vvi ppo ppo mtr mtr tae tae hvu ghi ghi bna bna cre sbi sbi sot cit bdi nta nta
Symbol AT3G57000 LOC100788480 LOC100778294 LOC101260019 LOC4329057 LOC100282562 LOC103841604 LOC100260745 LOC100258999 LOC7473563 LOC7464104 LOC11421258 LOC11430617 LOC123144707 LOC123127606 LOC123403065 LOC121210907 LOC107948147 LOC106368034 LOC106411956 CHLRE_01g009950v5 LOC8077752 LOC8076240 LOC102578568 LOC102606709 LOC100844288 LOC107767617 LOC107807130
Function* nucleolar essential protein-like protein ribosomal RNA small subunit methyltransferase NEP1-like ribosomal RNA small subunit methyltransferase NEP1-like uncharacterized LOC101260019 uncharacterized LOC4329057 ribosome biogenesis protein NEP1 ribosomal RNA small subunit methyltransferase NEP1 uncharacterized LOC100260745 uncharacterized LOC100258999 uncharacterized LOC7473563 uncharacterized LOC7464104 ribosomal RNA small subunit methyltransferase NEP1 ribosomal RNA small subunit methyltransferase nep-1 ribosomal RNA small subunit methyltransferase nep-1 ribosomal RNA small subunit methyltransferase nep-1 ribosomal RNA small subunit methyltransferase nep-1-like ribosomal RNA small subunit methyltransferase nep-1 ribosomal RNA small subunit methyltransferase nep-1 ribosomal RNA small subunit methyltransferase NEP1-like ribosomal RNA small subunit methyltransferase NEP1 uncharacterized protein ribosomal RNA small subunit methyltransferase nep-1 ribosomal RNA small subunit methyltransferase nep-1 ribosomal RNA small subunit methyltransferase NEP1 uncharacterized LOC102606709 ribosomal RNA small subunit methyltransferase nep-1 uncharacterized LOC107767617 uncharacterized LOC107807130
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 4
gma03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 5
sly03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 2
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 3
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
vvi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 5
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 9
ghi00590 Arachidonic acid metabolism 2
ghi00790 Folate biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 4
sbi03050 Proteasome 3
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 3
sbi03008 Ribosome biogenesis in eukaryotes 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 5
nta03008 Ribosome biogenesis in eukaryotes 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824867 100788480 100778294 101260019 4329057 100282562 103841604 100260745 100258999 7473563 7464104 11421258 11430617 123144707 123127606 123403065 121210907 107948147 106368034 106411956 5725842 8077752 8076240 102578568 102606709 100844288 107767617 107807130
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