ATTED-II : GeneCoexpression result

Species	Gene	Description
sbi-r.1	8079485	uncharacterized LOC8079485
zma-u.5	100277819	uncharacterized LOC100277819
osa-u.5	4326698	uncharacterized LOC4326698
tae-r.2	123060716	uncharacterized LOC123060716
tae-r.2	123069283	uncharacterized LOC123069283
tae-r.2	123077807	uncharacterized LOC123077807
hvu-r.1	123443195	uncharacterized LOC123443195
bdi-r.1	100832538	uncharacterized LOC100832538
ath-u.5	AT5G52950	LIM domain protein
gma-u.5	102660949	uncharacterized LOC102660949
sly-u.5	101257240	uncharacterized LOC101257240
bra-r.6	103849111	uncharacterized LOC103849111
bra-r.6	103846087	uncharacterized LOC103846087
vvi-u.5	100243267	uncharacterized LOC100243267
ppo-u.5	7489799	uncharacterized LOC7489799
mtr-u.5	11416493	uncharacterized LOC11416493
ghi-r.1	107890755	uncharacterized LOC107890755
ghi-r.1	107930162	uncharacterized LOC107930162
bna-r.1	BNAC09G29020D	uncharacterized BNAC09G29020D
bna-r.1	111202883	uncharacterized LOC111202883
bna-r.1	111213403	uncharacterized LOC111213403
sot-r.1	102606074	uncharacterized LOC102606074
cit-r.1	102617250	uncharacterized LOC102617250
nta-r.1	107760626	uncharacterized LOC107760626
nta-r.1	107770621	uncharacterized LOC107770621

Annotation

functional annotation

KEGG

GO BP

GO:0030174 [list] [network] regulation of DNA-templated DNA replication initiation	(4 genes)	IEA
GO:0007095 [list] [network] mitotic G2 DNA damage checkpoint signaling	(6 genes)	IEA
GO:0010212 [list] [network] response to ionizing radiation	(7 genes)	IEA
GO:0033314 [list] [network] mitotic DNA replication checkpoint signaling	(8 genes)	IEA
GO:0006260 [list] [network] DNA replication	(148 genes)	IEA

GO CC

GO:0005634 [list] [network] nucleus

(2977 genes)

IEA

GO MF

GO:0003682 [list] [network] chromatin binding

(124 genes)

IEA

Protein

XP_021311017.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 3, E.R. 3, cyto 1, mito 1, cysk_nucl 1, E.R._vacu 1

(predict for XP_021311017.1)

Subcellular
localization
TargetP

other 8

(predict for XP_021311017.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8079485	zma-u.5 for 100277819	osa-u.5 for 4326698	tae-r.2 for 123060716	tae-r.2 for 123069283	tae-r.2 for 123077807	hvu-r.1 for 123443195	bdi-r.1 for 100832538	ath-u.5 for AT5G52950	gma-u.5 for 102660949	sly-u.5 for 101257240	bra-r.6 for 103849111	bra-r.6 for 103846087	vvi-u.5 for 100243267	ppo-u.5 for 7489799	mtr-u.5 for 11416493	ghi-r.1 for 107890755	ghi-r.1 for 107930162	bna-r.1 for BNAC09G29020D	bna-r.1 for 111202883	bna-r.1 for 111213403	sot-r.1 for 102606074	cit-r.1 for 102617250	nta-r.1 for 107760626	nta-r.1 for 107770621

Ortholog

Ortholog ID: 10389

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

Function^*

uncharacterized LOC8079485

uncharacterized LOC100277819

uncharacterized LOC4326698

uncharacterized LOC123060716

uncharacterized LOC123069283

uncharacterized LOC123077807

uncharacterized LOC123443195

uncharacterized LOC100832538

LIM domain protein

uncharacterized LOC102660949

uncharacterized LOC101257240

uncharacterized LOC103849111

uncharacterized LOC103846087

uncharacterized LOC100243267

uncharacterized LOC7489799

uncharacterized LOC11416493

uncharacterized LOC107890755

uncharacterized LOC107930162

uncharacterized BNAC09G29020D

uncharacterized LOC111202883

uncharacterized LOC111213403

uncharacterized LOC102606074

uncharacterized LOC102617250

uncharacterized LOC107760626

uncharacterized LOC107770621

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03030	DNA replication	7

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03030	DNA replication	5
zma03440	Homologous recombination	3
zma03420	Nucleotide excision repair	2
zma03430	Mismatch repair	2
zma03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03030	DNA replication	3
osa03420	Nucleotide excision repair	2
osa03430	Mismatch repair	2
osa03440	Homologous recombination	2
osa03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	13
tae03410	Base excision repair	3
tae03420	Nucleotide excision repair	3
tae00230	Purine metabolism	2
tae00240	Pyrimidine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03030	DNA replication	8
tae00270	Cysteine and methionine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03030	DNA replication	7
bdi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03030	DNA replication	4
ath03440	Homologous recombination	3
ath03460	Fanconi anemia pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03030	DNA replication	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03440	Homologous recombination	3
sly03460	Fanconi anemia pathway	3
sly00240	Pyrimidine metabolism	2
sly01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03460	Fanconi anemia pathway	3
vvi03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03440	Homologous recombination	3
ppo03030	DNA replication	2
ppo03420	Nucleotide excision repair	2
ppo03430	Mismatch repair	2
ppo03460	Fanconi anemia pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03030	DNA replication	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03030	DNA replication	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03082	ATP-dependent chromatin remodeling	2
sot03430	Mismatch repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03440	Homologous recombination	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03030	DNA replication	12

Expression

Expression pattern

Entrez Gene ID^*

8079485

100277819

4326698

123060716

123069283

123077807

123443195

100832538

835372

102660949

101257240

103849111

103846087

100243267

7489799

11416493

107890755

107930162

106412994

111202883

111213403

102606074

102617250

107760626

107770621

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to 8079485 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8079485 (sbi-r.1 coexpression data)


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	1	1	1	3	1	1	1	1	1	2	1	1	1	2	3	1	1	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8079485 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8079485 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**