ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
sbi-r.1	8155648	AT-hook motif nuclear-localized protein 20
sbi-r.1	8073832	AT-hook motif nuclear-localized protein 25
sbi-r.1	8084946	AT-hook motif nuclear-localized protein 22
sbi-r.1	8072910	AT-hook motif nuclear-localized protein 25
zma-u.5	103638353	AT-hook motif nuclear-localized protein 25
zma-u.5	100286293	DNA-binding protein
zma-u.5	100284873	DNA-binding protein
osa-u.5	4331173	AT-hook motif nuclear-localized protein 20
osa-u.5	4330508	AT-hook motif nuclear-localized protein 25
osa-u.5	9271930	AT-hook motif nuclear-localized protein 25
tae-r.2	123145270	AT-hook motif nuclear-localized protein 25
hvu-r.1	123404716	AT-hook motif nuclear-localized protein 25-like
hvu-r.1	123403681	AT-hook motif nuclear-localized protein 20-like
bdi-r.1	100821604	AT-hook motif nuclear-localized protein 23-like
ath-u.5	AGF2	AT-hook protein of GA feedback 2
ath-u.5	AHL20	AT-hook motif nuclear-localized protein 20
ath-u.5	AGF1	AT-hook protein of GA feedback 1
gma-u.5	100787100	AT-hook motif nuclear-localized protein 15
gma-u.5	100798994	AT-hook motif nuclear-localized protein 20
sly-u.5	101268318	AT-hook motif nuclear-localized protein 20-like
sly-u.5	101252037	AT-hook motif nuclear-localized protein 20
sly-u.5	101244283	AT-hook motif nuclear-localized protein 27
bra-r.6	103829405	AT-hook motif nuclear-localized protein 27
bra-r.6	103863517	AT-hook motif nuclear-localized protein 20
vvi-u.5	100242785	AT-hook motif nuclear-localized protein 25
vvi-u.5	100244453	AT-hook motif nuclear-localized protein 19
vvi-u.5	100245113	AT-hook motif nuclear-localized protein 25
ppo-u.5	7471741	AT-hook motif nuclear-localized protein 25
ppo-u.5	18098174	AT-hook motif nuclear-localized protein 25
ppo-u.5	7492425	AT-hook motif nuclear-localized protein 20
mtr-u.5	25484399	AT-hook motif nuclear-localized protein 20
mtr-u.5	11425082	AT-hook motif nuclear-localized protein 19
mtr-u.5	25483016	AT-hook motif nuclear-localized protein 20
ghi-r.1	121207795	AT-hook motif nuclear-localized protein 15
ghi-r.1	121228234	AT-hook motif nuclear-localized protein 25
ghi-r.1	107889231	AT-hook motif nuclear-localized protein 19
bna-r.1	111210254	AT-hook motif nuclear-localized protein 27
bna-r.1	106370221	AT-hook motif nuclear-localized protein 25
bna-r.1	106388944	AT-hook motif nuclear-localized protein 15
sot-r.1	102604198	AT-hook motif nuclear-localized protein 20-like
sot-r.1	102600277	AT-hook motif nuclear-localized protein 20-like
sot-r.1	102597116	AT-hook motif nuclear-localized protein 15
cit-r.1	102610565	AT-hook motif nuclear-localized protein 27
cit-r.1	102607186	AT-hook motif nuclear-localized protein 25-like
cit-r.1	102622208	AT-hook motif nuclear-localized protein 20-like
nta-r.1	107767128	AT-hook motif nuclear-localized protein 15-like
nta-r.1	107772075	AT-hook motif nuclear-localized protein 20
nta-r.1	107790186	AT-hook motif nuclear-localized protein 20-like

Top 50 coexpressed genes to 8155648 (sbi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 8155648 (sbi-r.1 coexpression data)

CoexMap"8155648"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO:0005634 [list] [network] nucleus

(2977 genes)

IEA

GO MF

GO:0003680 [list] [network] minor groove of adenine-thymine-rich DNA binding	(26 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1111 genes)	IEA

Protein

XP_002489068.2 [sequence] [blastp]

Subcellular
localization
wolf

cyto 4, chlo 4, cyto_nucl 3, nucl 1

(predict for XP_002489068.2)

Subcellular
localization
TargetP

mito 2

(predict for XP_002489068.2)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	sbi-r.1 for 8155648	sbi-r.1 for 8073832	sbi-r.1 for 8084946	sbi-r.1 for 8072910	zma-u.5 for 103638353	zma-u.5 for 100286293	zma-u.5 for 100284873	osa-u.5 for 4331173	osa-u.5 for 4330508	osa-u.5 for 9271930	tae-r.2 for 123145270	hvu-r.1 for 123404716	hvu-r.1 for 123403681	bdi-r.1 for 100821604	ath-u.5 for AGF2	ath-u.5 for AHL20	ath-u.5 for AGF1	gma-u.5 for 100787100	gma-u.5 for 100798994	sly-u.5 for 101268318	sly-u.5 for 101252037	sly-u.5 for 101244283	bra-r.6 for 103829405	bra-r.6 for 103863517	vvi-u.5 for 100242785	vvi-u.5 for 100244453	vvi-u.5 for 100245113	ppo-u.5 for 7471741	ppo-u.5 for 18098174	ppo-u.5 for 7492425	mtr-u.5 for 25484399	mtr-u.5 for 11425082	mtr-u.5 for 25483016	ghi-r.1 for 121207795	ghi-r.1 for 121228234	ghi-r.1 for 107889231	bna-r.1 for 111210254	bna-r.1 for 106370221	bna-r.1 for 106388944	sot-r.1 for 102604198	sot-r.1 for 102600277	sot-r.1 for 102597116	cit-r.1 for 102610565	cit-r.1 for 102607186	cit-r.1 for 102622208	nta-r.1 for 107767128	nta-r.1 for 107772075	nta-r.1 for 107790186

Ortholog

Ortholog ID: 372

Species

sbi

zma

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

AGF2

ESC

SOB3

Function^*

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 25

DNA-binding protein

uncharacterized LOC100280097

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 29

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 23-like

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 23-like

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 22

AT-hook protein of GA feedback 2

Putative AT-hook DNA-binding family protein

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 29

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 19

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 29

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 25-like

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 15-like

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 20-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00520	Amino sugar and nucleotide sugar metabolism	3
sbi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	2
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	4
bdi04016	MAPK signaling pathway - plant	3
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00908	Zeatin biosynthesis	4
ath04016	MAPK signaling pathway - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	3
gma00053	Ascorbate and aldarate metabolism	2
gma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	6
sly04075	Plant hormone signal transduction	5
sly00270	Cysteine and methionine metabolism	2
sly00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03060	Protein export	2
sly04145	Phagosome	2
sly03008	Ribosome biogenesis in eukaryotes	2
sly03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	7
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
bra00941	Flavonoid biosynthesis	3
bra00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
bra00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3
vvi04141	Protein processing in endoplasmic reticulum	2
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	3
ppo04626	Plant-pathogen interaction	3
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3
sot04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00941	Flavonoid biosynthesis	3
cit02010	ABC transporters	3
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00073	Cutin, suberine and wax biosynthesis	2
cit00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	9
nta04075	Plant hormone signal transduction	8

Expression

Expression pattern

Entrez Gene ID^*

8155648

8073832

8054840

103638353

100284459

100280097

4330508

9271930

4332382

123095556

123082528

123405116

123446795

100821604

100832651

100837302

824721

838683

843983

100787100

100798994

100791954

101268318

101252037

101244283

103828491

103832112

103830018

100242785

100245113

100261537

7492425

7467535

7458128

25484399

11425082

25483016

107898895

121226550

107944988

111210254

106422551

106428954

102604198

102600277

102585675

102610565

102607186

102622208

107767128

107824415

107811115

The preparation time of this page was 0.3 [sec].


Species	sbi	zma	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	4	3	3	1	2	1	3	2	3	2	3	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 8155648 (sbi-r.1 coexpression data)

Top 50 enrichment test to 8155648 (sbi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**