ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
zma-u.5	103638353	AT-hook motif nuclear-localized protein 25
zma-r.6	103638353	AT-hook motif nuclear-localized protein 25
zma-m.5	103638353	AT-hook motif nuclear-localized protein 25
zma-u.5	103627644	AT-hook motif nuclear-localized protein 25
zma-u.5	100286293	DNA-binding protein
zma-u.5	100284873	DNA-binding protein
sbi-r.1	8155648	AT-hook motif nuclear-localized protein 20
sbi-r.1	8054840	AT-hook motif nuclear-localized protein 20
sbi-r.1	8072910	AT-hook motif nuclear-localized protein 25
osa-u.5	4330508	AT-hook motif nuclear-localized protein 25
osa-u.5	9271930	AT-hook motif nuclear-localized protein 25
osa-u.5	4331173	AT-hook motif nuclear-localized protein 20
tae-r.2	123128172	AT-hook motif nuclear-localized protein 25
tae-r.2	123082528	AT-hook motif nuclear-localized protein 20
hvu-r.1	123402961	AT-hook motif nuclear-localized protein 20-like
hvu-r.1	123403681	AT-hook motif nuclear-localized protein 20-like
hvu-r.1	123405116	AT-hook motif nuclear-localized protein 23-like
bdi-r.1	100821604	AT-hook motif nuclear-localized protein 23-like
ath-u.5	AGF2	AT-hook protein of GA feedback 2
ath-u.5	AHL20	AT-hook motif nuclear-localized protein 20
ath-u.5	AGF1	AT-hook protein of GA feedback 1
gma-u.5	100797639	AT-hook motif nuclear-localized protein 19
gma-u.5	100811243	AT-hook motif nuclear-localized protein 15
sly-u.5	101268318	AT-hook motif nuclear-localized protein 20-like
sly-u.5	101252037	AT-hook motif nuclear-localized protein 20
sly-u.5	101248201	AT-hook motif nuclear-localized protein 15-like
bra-r.6	103828491	AT-hook motif nuclear-localized protein 25
bra-r.6	103830018	AT-hook motif nuclear-localized protein 15
bra-r.6	103863517	AT-hook motif nuclear-localized protein 20
vvi-u.5	100242785	AT-hook motif nuclear-localized protein 25
vvi-u.5	100244453	AT-hook motif nuclear-localized protein 19
vvi-u.5	100261537	AT-hook motif nuclear-localized protein 15
ppo-u.5	7492425	AT-hook motif nuclear-localized protein 20
ppo-u.5	7458128	AT-hook motif nuclear-localized protein 15
ppo-u.5	7467535	AT-hook motif nuclear-localized protein 20
mtr-u.5	25483016	AT-hook motif nuclear-localized protein 20
mtr-u.5	11425082	AT-hook motif nuclear-localized protein 19
mtr-u.5	25484399	AT-hook motif nuclear-localized protein 20
ghi-r.1	107949228	AT-hook motif nuclear-localized protein 25
ghi-r.1	121203415	AT-hook motif nuclear-localized protein 25
ghi-r.1	121228234	AT-hook motif nuclear-localized protein 25
bna-r.1	111210254	AT-hook motif nuclear-localized protein 27
bna-r.1	106449083	AT-hook motif nuclear-localized protein 29-like
bna-r.1	106445363	AT-hook motif nuclear-localized protein 15
sot-r.1	102597116	AT-hook motif nuclear-localized protein 15
sot-r.1	102600277	AT-hook motif nuclear-localized protein 20-like
sot-r.1	102585675	AT-hook motif nuclear-localized protein 27
cit-r.1	102610565	AT-hook motif nuclear-localized protein 27
cit-r.1	102607186	AT-hook motif nuclear-localized protein 25-like
cit-r.1	102610631	AT-hook motif nuclear-localized protein 19
nta-r.1	107827646	AT-hook motif nuclear-localized protein 27
nta-r.1	107824415	AT-hook motif nuclear-localized protein 20
nta-r.1	107822002	AT-hook motif nuclear-localized protein 20-like

Top 50 coexpressed genes to 103638353 (zma-u.5 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 103638353 (zma-u.5 coexpression data)

CoexMap"103638353"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0010228 [list] [network] vegetative to reproductive phase transition of meristem

(12 genes)

IEA

GO CC

GO:0005634 [list] [network] nucleus

(3371 genes)

IEA

GO MF

GO:0003680 [list] [network] minor groove of adenine-thymine-rich DNA binding	(38 genes)	IEA
GO:0003700 [list] [network] DNA-binding transcription factor activity	(1355 genes)	IEA

Protein

XP_008659508.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 8, cyto 1, mito 1, cysk 1

(predict for XP_008659508.1)

Subcellular
localization
TargetP

other 5, mito 4

(predict for XP_008659508.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target			Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	zma-u.5 for 103638353	zma-r.6 for 103638353	zma-m.5 for 103638353	zma-u.5 for 103627644	zma-u.5 for 100286293	zma-u.5 for 100284873	sbi-r.1 for 8155648	sbi-r.1 for 8054840	sbi-r.1 for 8072910	osa-u.5 for 4330508	osa-u.5 for 9271930	osa-u.5 for 4331173	tae-r.2 for 123128172	tae-r.2 for 123082528	hvu-r.1 for 123402961	hvu-r.1 for 123403681	hvu-r.1 for 123405116	bdi-r.1 for 100821604	ath-u.5 for AGF2	ath-u.5 for AHL20	ath-u.5 for AGF1	gma-u.5 for 100797639	gma-u.5 for 100811243	sly-u.5 for 101268318	sly-u.5 for 101252037	sly-u.5 for 101248201	bra-r.6 for 103828491	bra-r.6 for 103830018	bra-r.6 for 103863517	vvi-u.5 for 100242785	vvi-u.5 for 100244453	vvi-u.5 for 100261537	ppo-u.5 for 7492425	ppo-u.5 for 7458128	ppo-u.5 for 7467535	mtr-u.5 for 25483016	mtr-u.5 for 11425082	mtr-u.5 for 25484399	ghi-r.1 for 107949228	ghi-r.1 for 121203415	ghi-r.1 for 121228234	bna-r.1 for 111210254	bna-r.1 for 106449083	bna-r.1 for 106445363	sot-r.1 for 102597116	sot-r.1 for 102600277	sot-r.1 for 102585675	cit-r.1 for 102610565	cit-r.1 for 102607186	cit-r.1 for 102610631	nta-r.1 for 107827646	nta-r.1 for 107824415	nta-r.1 for 107822002

Ortholog

Ortholog ID: 372

Species

zma

sbi

osa

tae

hvu

bdi

ath

gma

sly

bra

vvi

ppo

mtr

ghi

bna

sot

cit

nta

Symbol

AGF2

ESC

SOB3

Function^*

AT-hook motif nuclear-localized protein 25

uncharacterized LOC100280097

DNA-binding protein

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 29

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 23-like

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 23-like

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 22

AT-hook protein of GA feedback 2

Putative AT-hook DNA-binding family protein

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 29

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 19

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 25

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 29

AT-hook motif nuclear-localized protein 15

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 27

AT-hook motif nuclear-localized protein 25-like

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 20

AT-hook motif nuclear-localized protein 20-like

AT-hook motif nuclear-localized protein 15-like

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi00520	Amino sugar and nucleotide sugar metabolism	3
sbi01250	Biosynthesis of nucleotide sugars	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04016	MAPK signaling pathway - plant	2
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00940	Phenylpropanoid biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi04075	Plant hormone signal transduction	4
bdi04016	MAPK signaling pathway - plant	3
bdi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath00908	Zeatin biosynthesis	4
ath04016	MAPK signaling pathway - plant	2
ath04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00943	Isoflavonoid biosynthesis	3
gma00053	Ascorbate and aldarate metabolism	2
gma00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04016	MAPK signaling pathway - plant	6
sly04075	Plant hormone signal transduction	5
sly00270	Cysteine and methionine metabolism	2
sly00670	One carbon pool by folate	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04141	Protein processing in endoplasmic reticulum	5
sly03060	Protein export	2
sly04145	Phagosome	2
sly03008	Ribosome biogenesis in eukaryotes	2
sly03083	Polycomb repressive complex	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00940	Phenylpropanoid biosynthesis	7
bra00130	Ubiquinone and other terpenoid-quinone biosynthesis	3
bra00941	Flavonoid biosynthesis	3
bra00945	Stilbenoid, diarylheptanoid and gingerol biosynthesis	3
bra00360	Phenylalanine metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04120	Ubiquitin mediated proteolysis	3
vvi04141	Protein processing in endoplasmic reticulum	2
vvi00480	Glutathione metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04016	MAPK signaling pathway - plant	3
ppo04626	Plant-pathogen interaction	3
ppo04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2
mtr00910	Nitrogen metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3
sot04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00941	Flavonoid biosynthesis	3
cit02010	ABC transporters	3
cit04712	Circadian rhythm - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00073	Cutin, suberine and wax biosynthesis	2
cit00071	Fatty acid degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta04016	MAPK signaling pathway - plant	9
nta04075	Plant hormone signal transduction	8

Expression

Expression pattern

Entrez Gene ID^*

103638353

100280097

100284459

8155648

8054840

8073832

4330508

9271930

4332382

123082528

123095556

123405116

123446795

100821604

100832651

100837302

824721

838683

843983

100787100

100791954

100798994

101268318

101252037

101244283

103828491

103830018

103832112

100242785

100261537

100245113

7492425

7458128

7467535

25483016

11425082

25484399

107898895

121226550

107944988

111210254

106422551

106428954

102600277

102585675

102604198

102610565

102607186

102622208

107824415

107811115

107767128

The preparation time of this page was 0.2 [sec].


Species	zma	sbi	osa	tae	hvu	bdi	ath	gma	sly	bra	vvi	ppo	mtr	ghi	bna	sot	cit	nta	cre
Paralog	6	3	3	2	3	1	3	2	3	3	3	3	3	3	3	3	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 103638353 (zma-u.5 coexpression data)

Top 50 enrichment test to 103638353 (zma-u.5 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**