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Orthologous genes in OrthoFinder**

Species Gene Description
 ghi-r.1   107888474   methyl-CpG-binding domain protein 4-like protein 
 ghi-r.1   107931354   methyl-CpG-binding domain protein 4-like protein 
 ghi-r.1   107909880   methyl-CpG-binding domain protein 4-like protein 
 ath-u.5   AT3G07930   DNA glycosylase superfamily protein 
 bra-r.6   103848313   methyl-CpG-binding domain protein 4-like protein 
 bna-r.1   106376420   methyl-CpG-binding domain protein 4-like protein 
 bna-r.1   125576636   methyl-CpG-binding domain protein 4-like protein 
 cit-r.1   102607342   methyl-CpG-binding domain protein 4-like protein 
 gma-u.5   102666145   uncharacterized LOC102666145 
 gma-u.5   100793802   uncharacterized LOC100793802 
 vvi-u.5   100244192   methyl-CpG-binding domain protein 4-like protein 
 ppo-u.5   7454029   methyl-CpG-binding domain protein 4-like protein 
 ppo-u.5   7463420   methyl-CpG-binding domain protein 4-like protein 
 ppo-u.5   18105446   methyl-CpG-binding domain protein 4-like protein 
 mtr-u.5   25479887   methyl-CpG-binding domain protein 4-like protein 
 mtr-u.5   25479885   methyl-CpG-binding domain protein 4-like protein 
 sly-u.5   101255935   methyl-CpG-binding domain protein 4-like protein 
 sot-r.1   102596231   methyl-CpG-binding domain protein 4-like protein 
 nta-r.1   142180380   uncharacterized LOC142180380 
 osa-u.5   4346365   uncharacterized LOC4346365 
 zma-u.5   103629127   Methyl-CpG-binding domain protein 4-like protein 
 tae-r.2   123108734   microtubule-associated protein futsch 
 tae-r.2   123119151   uncharacterized LOC123119151 
 tae-r.2   123119160   uncharacterized LOC123119160 
 hvu-r.1   123404642   titin 
 sbi-r.1   8059659   serine/arginine repetitive matrix protein 1 
 sbi-r.1   8059657   uncharacterized LOC8059657 
 bdi-r.1   100825070   uncharacterized LOC100825070 
 cre-r.1   CHLRE_05g234250v5   uncharacterized protein 

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Top 50 coexpressed genes to 107888474 (ghi-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 107888474 (ghi-r.1 coexpression data)

CoexMap"107888474"


ghiLOC107888474 | Entrez gene ID : 107888474    
Species ghi ath bra bna cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 3 1 1 2 1 2 1 3 2 1 1 1 1 1 3 1 2 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ghi03410 [list] [network] Base excision repair (108 genes)
GO BP
GO:0006284 [list] [network] base-excision repair  (63 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (7681 genes)  IEA  
GO MF
GO:0003677 [list] [network] DNA binding  (4831 genes)  IEA  
GO:0003824 [list] [network] catalytic activity  (20761 genes)  IEA  
Protein XP_016668086.1 [sequence] [blastp]
XP_040933529.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 1,  plas 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_016668086.1)
nucl 7,  cyto 1,  plas 1,  cysk 1,  cyto_pero 1,  cysk_plas 1,  cyto_E.R. 1  (predict for XP_040933529.1)
Subcellular
localization
TargetP
other 8  (predict for XP_016668086.1)
other 8  (predict for XP_040933529.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

ghi-r.1
for
107888474
ghi-r.1
for
107931354
ghi-r.1
for
107909880
ath-u.5
for
AT3G07930
bra-r.6
for
103848313
bna-r.1
for
106376420
bna-r.1
for
125576636
cit-r.1
for
102607342
gma-u.5
for
102666145
gma-u.5
for
100793802
vvi-u.5
for
100244192
ppo-u.5
for
7454029
ppo-u.5
for
7463420
ppo-u.5
for
18105446
mtr-u.5
for
25479887
mtr-u.5
for
25479885
sly-u.5
for
101255935
sot-r.1
for
102596231
nta-r.1
for
142180380
osa-u.5
for
4346365
zma-u.5
for
103629127
tae-r.2
for
123108734
tae-r.2
for
123119151
tae-r.2
for
123119160
hvu-r.1
for
123404642
sbi-r.1
for
8059659
sbi-r.1
for
8059657
bdi-r.1
for
100825070
cre-r.1
for
CHLRE_05g234250v5


Ortholog ID: 7199
Species ghi ghi ghi ath bra bna bna cit gma gma vvi ppo ppo ppo mtr mtr sly sot nta osa zma tae tae tae hvu sbi sbi bdi cre
Symbol LOC107888474 LOC107931354 LOC107909880 AT3G07930 LOC103848313 LOC106376420 LOC125576636 LOC102607342 LOC102666145 LOC100793802 LOC100244192 LOC7454029 LOC18105443 LOC18105441 LOC25479887 LOC25479885 LOC101255935 LOC102596231 LOC142180380 LOC4346365 LOC103629127 LOC123108734 LOC123119151 LOC123119160 LOC123404642 LOC8059659 LOC8059657 LOC100825070 CHLRE_05g234250v5
Function* methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein DNA glycosylase superfamily protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein uncharacterized LOC102666145 uncharacterized LOC100793802 methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein methyl-CpG-binding domain protein 4-like protein uncharacterized LOC142180380 uncharacterized LOC4346365 Methyl-CpG-binding domain protein 4-like protein microtubule-associated protein futsch uncharacterized LOC123119151 uncharacterized LOC123119160 titin serine/arginine repetitive matrix protein 1 uncharacterized LOC8059657 uncharacterized LOC100825070 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi03022 Basal transcription factors 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04120 Ubiquitin mediated proteolysis 4
ghi03022 Basal transcription factors 2
ghi04141 Protein processing in endoplasmic reticulum 2
ghi03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 5
gma03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03410 Base excision repair 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03410 Base excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00760 Nicotinate and nicotinamide metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae03015 mRNA surveillance pathway 2
tae00760 Nicotinate and nicotinamide metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 107888474 107931354 107909880 819984 103848313 106376420 125576636 102607342 102666145 100793802 100244192 7454029 18105443 18105441 25479887 25479885 101255935 102596231 142180380 4346365 103629127 123108734 123119151 123119160 123404642 8059659 8059657 100825070 5727746
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