ATTED-II : GeneCoexpression result

Species	Gene	Description
ghi-r.1	ycf1	Ycf1
ghi-r.1	121228061	protein TIC 214-like
ghi-r.1	121226620	protein TIC 214-like
ath-u.5	AT2G07739	Ycf1 protein
ath-u.5	ycf1	hypothetical protein
bra-r.6	117129790	protein TIC 214
bra-r.6	117129784	protein TIC 214
bna-r.1	orf257	hypothetical protein
bna-r.1	ycf1	hypothetical protein
bna-r.1	ycf1	hypothetical protein
cit-r.1	ycf1	hypothetical chloroplast RF1
cit-r.1	127899826	protein TIC 214
cit-r.1	127900060	protein TIC 214-like
gma-u.5	ycf1	hypothetical chloroplast RF1
gma-u.5	ycf1	hypothetical chloroplast RF1
vvi-u.5	ycf1	hypothetical chloroplast RF1
ppo-u.5	Poptr_cp087	Ycf1
ppo-u.5	Poptr_cp076	hypothetical protein
mtr-u.5	112416088	protein TIC 214
mtr-u.5	120579889	protein TIC 214
mtr-u.5	120580686	uncharacterized mitochondrial protein AtMg00370
sly-u.5	112940893	putative protein TIC 214 N-terminal part
sly-u.5	101268834	protein TIC 214
sot-r.1	ycf1	hypothetical chloroplast RF1
nta-r.1	ycf1	Ycf1
nta-r.1	NitaCp079	hypothetical protein

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

YP_538982.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 6, vacu 1, E.R. 1, E.R._vacu 1

(predict for YP_538982.1)

Subcellular
localization
TargetP

scret 9

(predict for YP_538982.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for ycf1	ghi-r.1 for 121228061	ghi-r.1 for 121226620	ath-u.5 for AT2G07739	ath-u.5 for ycf1	bra-r.6 for 117129790	bra-r.6 for 117129784	bna-r.1 for orf257	bna-r.1 for ycf1	bna-r.1 for ycf1	cit-r.1 for ycf1	cit-r.1 for 127899826	cit-r.1 for 127900060	gma-u.5 for ycf1	gma-u.5 for ycf1	vvi-u.5 for ycf1	ppo-u.5 for Poptr_cp087	ppo-u.5 for Poptr_cp076	mtr-u.5 for 112416088	mtr-u.5 for 120579889	mtr-u.5 for 120580686	sly-u.5 for 112940893	sly-u.5 for 101268834	sot-r.1 for ycf1	nta-r.1 for ycf1	nta-r.1 for NitaCp079

Ortholog

Ortholog ID: 3899

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

Symbol

ycf1

orf257

ycf1

ycf1

ycf1

Function^*

protein TIC 214-like

Ycf1 protein

hypothetical protein

Ycf1

protein TIC 214

hypothetical protein

hypothetical chloroplast RF1

protein TIC 214-like

hypothetical chloroplast RF1

Ycf1

hypothetical protein

protein TIC 214

uncharacterized mitochondrial protein AtMg00370

protein TIC 214

putative protein TIC 214 N-terminal part

protein TIC 214

hypothetical chloroplast RF1

Ycf1

hypothetical protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	7
ghi00190	Oxidative phosphorylation	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	8
ath00190	Oxidative phosphorylation	6
ath00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	11
ath00970	Aminoacyl-tRNA biosynthesis	4
ath00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	5
bra00190	Oxidative phosphorylation	4
bra03020	RNA polymerase	3
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00195	Photosynthesis	5
bra00190	Oxidative phosphorylation	4
bra03020	RNA polymerase	3
bra00630	Glyoxylate and dicarboxylate metabolism	2
bra00710	Carbon fixation by Calvin cycle	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	3
bna03020	RNA polymerase	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	6
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	4
bna03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	5
cit00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	7
cit00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	5
cit00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00190	Oxidative phosphorylation	12
gma03010	Ribosome	5
gma00195	Photosynthesis	5
gma03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	11
gma00195	Photosynthesis	4
gma00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	9
vvi00190	Oxidative phosphorylation	3
vvi00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	8
ppo00190	Oxidative phosphorylation	6
ppo00195	Photosynthesis	2
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00190	Oxidative phosphorylation	7
ppo03010	Ribosome	6
ppo00195	Photosynthesis	5
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr00190	Oxidative phosphorylation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	4
mtr00190	Oxidative phosphorylation	3
mtr00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	11
sly00970	Aminoacyl-tRNA biosynthesis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	11
sly00190	Oxidative phosphorylation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	8
sot00190	Oxidative phosphorylation	5
sot00195	Photosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00195	Photosynthesis	6
nta00970	Aminoacyl-tRNA biosynthesis	4
nta03010	Ribosome	4
nta00190	Oxidative phosphorylation	2

Expression

Expression pattern

Entrez Gene ID^*

121228061

815412

844706

4386139

117129790

117129784

4237937

11542056

11542013

4271147

127900060

4271109

3989366

3989353

4025074

4929748

4929736

120579889

120580686

11435808

112940893

101268834

3950474

4099913

7564685

1466307

Select Species^**

Orthologous genes in OrthoFinder^**

Top 50 coexpressed genes to ycf1 (ghi-r.1 coexpression data)

Top 50 enrichment test to ycf1 (ghi-r.1 coexpression data)


Species	ghi	ath	bra	bna	cit	gma	vvi	ppo	mtr	sly	sot	nta	sbi	osa	tae	hvu	zma	cre	bdi
Paralog	3	2	2	3	3	2	1	2	3	2	1	2	0	0	0	0	0	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to ycf1 (ghi-r.1 coexpression data)

Top 50 enrichment test to ycf1 (ghi-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**