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Orthologous genes in OrthoFinder**

Species Gene Description
 bna-r.1   125575153   transcription factor E2FA-like 
 bna-r.1   106371664   transcription factor E2FB 
 bna-r.1   106438374   transcription factor E2FB 
 bna-r.1   111215205   transcription factor E2FA-like 
 bra-r.6   103865508   transcription factor E2FA 
 bra-r.6   103845563   transcription factor E2FB 
 bra-r.6   103856506   transcription factor E2FB 
 ath-u.5   E2F3   E2F transcription factor 3 
 ath-u.5   E2F1   E2F transcription factor 1 
 ghi-r.1   107954118   transcription factor E2FB 
 ghi-r.1   107953162   transcription factor E2FB 
 ghi-r.1   107952329   transcription factor E2FA 
 cit-r.1   102617974   transcription factor E2FA 
 cit-r.1   102630455   transcription factor E2FB 
 gma-u.5   100819817   transcription factor E2FB 
 gma-u.5   100809283   transcription factor E2FA 
 gma-u.5   100811762   transcription factor E2FA 
 vvi-u.5   100245057   transcription factor E2FB 
 vvi-u.5   100249486   transcription factor E2FA 
 ppo-u.5   7465237   transcription factor E2FA 
 ppo-u.5   7466004   transcription factor E2FA 
 ppo-u.5   7460071   transcription factor E2FB 
 mtr-u.5   11446346   transcription factor E2FB 
 mtr-u.5   11409018   transcription factor E2FA 
 sly-u.5   101244053   transcription factor E2FB 
 sly-u.5   101258866   transcription factor E2FB-like 
 sly-u.5   101265247   transcription factor E2FB-like 
 sot-r.1   102578597   transcription factor E2FB-like 
 sot-r.1   102584400   transcription factor E2FA 
 sot-r.1   102593965   transcription factor E2FB 
 nta-r.1   107803329   transcription factor E2FB 
 nta-r.1   107795539   transcription factor E2FB-like 
 nta-r.1   107816179   transcription factor E2FA 
 osa-u.5   4329577   transcription factor E2FB 
 osa-u.5   4335808   transcription factor E2FA 
 osa-u.5   4351555   transcription factor E2FA 
 zma-u.5   100279729   transcription factor E2F3 
 zma-u.5   100192057   uncharacterized LOC100192057 
 tae-r.2   123189172   transcription factor E2FA 
 tae-r.2   123102977   transcription factor E2FA 
 tae-r.2   123144532   transcription factor E2FA 
 hvu-r.1   123401733   transcription factor E2FA-like 
 hvu-r.1   123395596   transcription factor E2FA-like 
 hvu-r.1   123426689   transcription factor E2FA-like 
 sbi-r.1   8079845   transcription factor E2FB 
 sbi-r.1   8061020   transcription factor E2FA 
 bdi-r.1   100823596   transcription factor E2FA 
 bdi-r.1   100830591   transcription factor E2FA 
 bdi-r.1   100839650   transcription factor E2FA 
 cre-r.1   CHLRE_01g052300v5   uncharacterized protein 

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Top 50 coexpressed genes to 125575153 (bna-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 125575153 (bna-r.1 coexpression data)

CoexMap"125575153"


bnaLOC125575153 | Entrez gene ID : 125575153    
Species bna bra ath ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 4 3 2 3 2 3 2 3 2 3 3 3 3 2 3 3 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006357 [list] [network] regulation of transcription by RNA polymerase II  (1371 genes)  IEA  
GO CC
GO:0090575 [list] [network] RNA polymerase II transcription regulator complex  (303 genes)  IEA  
GO MF
GO:0000978 [list] [network] RNA polymerase II cis-regulatory region sequence-specific DNA binding  (792 genes)  IEA  
GO:0000981 [list] [network] DNA-binding transcription factor activity, RNA polymerase II-specific  (968 genes)  IEA  
GO:0046983 [list] [network] protein dimerization activity  (1531 genes)  IEA  
Protein XP_048630474.1 [sequence] [blastp]
XP_048630475.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  nucl 1,  plas 1,  vacu 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_048630474.1)
chlo 7,  nucl 1,  plas 1,  pero 1,  cyto_nucl 1,  cysk_nucl 1  (predict for XP_048630475.1)
Subcellular
localization
TargetP
chlo 8  (predict for XP_048630474.1)
chlo 8  (predict for XP_048630475.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

bna-r.1
for
125575153
bna-r.1
for
106371664
bna-r.1
for
106438374
bna-r.1
for
111215205
bra-r.6
for
103865508
bra-r.6
for
103845563
bra-r.6
for
103856506
ath-u.5
for
E2F3
ath-u.5
for
E2F1
ghi-r.1
for
107954118
ghi-r.1
for
107953162
ghi-r.1
for
107952329
cit-r.1
for
102617974
cit-r.1
for
102630455
gma-u.5
for
100819817
gma-u.5
for
100809283
gma-u.5
for
100811762
vvi-u.5
for
100245057
vvi-u.5
for
100249486
ppo-u.5
for
7465237
ppo-u.5
for
7466004
ppo-u.5
for
7460071
mtr-u.5
for
11446346
mtr-u.5
for
11409018
sly-u.5
for
101244053
sly-u.5
for
101258866
sly-u.5
for
101265247
sot-r.1
for
102578597
sot-r.1
for
102584400
sot-r.1
for
102593965
nta-r.1
for
107803329
nta-r.1
for
107795539
nta-r.1
for
107816179
osa-u.5
for
4329577
osa-u.5
for
4335808
osa-u.5
for
4351555
zma-u.5
for
100279729
zma-u.5
for
100192057
tae-r.2
for
123189172
tae-r.2
for
123102977
tae-r.2
for
123144532
hvu-r.1
for
123401733
hvu-r.1
for
123395596
hvu-r.1
for
123426689
sbi-r.1
for
8079845
sbi-r.1
for
8061020
bdi-r.1
for
100823596
bdi-r.1
for
100830591
bdi-r.1
for
100839650
cre-r.1
for
CHLRE_01g052300v5


Ortholog ID: 1457
Species bna bna bra bra bra ath ath ghi ghi ghi cit cit gma gma gma vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi bdi cre
Symbol LOC106371664 LOC111215205 LOC103865508 LOC103856506 LOC103867321 E2F3 E2F1 LOC107953162 LOC107891571 LOC107889196 LOC102617974 LOC102630455 LOC100819817 LOC100809283 LOC100812368 LOC100245057 LOC100249486 LOC7465237 LOC7466004 LOC18098100 LOC11446346 LOC11409018 LOC101258866 LOC101265247 LOC101259362 LOC102578597 LOC102584400 LOC107063348 LOC107795539 LOC107816762 LOC107792954 LOC4329577 LOC4335808 LOC4351555 LOC100279729 LOC100192057 LOC100285220 LOC123102977 LOC123144532 LOC123045420 LOC123401733 LOC123395596 LOC123426689 LOC8079845 LOC8061020 LOC100823596 LOC100830591 LOC100839650 CHLRE_01g052300v5
Function* transcription factor E2FB transcription factor E2FA-like transcription factor E2FA transcription factor E2FB transcription factor E2FA E2F transcription factor 3 E2F transcription factor 1 transcription factor E2FB transcription factor E2FB transcription factor E2FB transcription factor E2FA transcription factor E2FB transcription factor E2FB transcription factor E2FA transcription factor E2FB transcription factor E2FB transcription factor E2FA transcription factor E2FA transcription factor E2FA transcription factor E2FB transcription factor E2FB transcription factor E2FA transcription factor E2FB-like transcription factor E2FB-like transcription factor E2FA transcription factor E2FB-like transcription factor E2FA transcription factor E2FB-like transcription factor E2FB-like transcription factor E2FA transcription factor E2FB-like transcription factor E2FB transcription factor E2FA transcription factor E2FA transcription factor E2F3 uncharacterized LOC100192057 transcription factor E2F3 transcription factor E2FA transcription factor E2FA transcription factor E2FA transcription factor E2FA-like transcription factor E2FA-like transcription factor E2FA-like transcription factor E2FB transcription factor E2FA transcription factor E2FA transcription factor E2FA transcription factor E2FA uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03082 ATP-dependent chromatin remodeling 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03030 DNA replication 3
ath03420 Nucleotide excision repair 2
ath03430 Mismatch repair 2
ath03440 Homologous recombination 2
ath03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00510 N-Glycan biosynthesis 2
ghi00513 Various types of N-glycan biosynthesis 2
ghi00900 Terpenoid backbone biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 3
gma01232 Nucleotide metabolism 3
gma03030 DNA replication 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 7
gma03410 Base excision repair 5
gma03420 Nucleotide excision repair 5
gma03430 Mismatch repair 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03030 DNA replication 3
gma03410 Base excision repair 3
gma03420 Nucleotide excision repair 3
gma03430 Mismatch repair 3
gma03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03440 Homologous recombination 4
ppo03460 Fanconi anemia pathway 3
ppo03030 DNA replication 2
ppo03420 Nucleotide excision repair 2
ppo03430 Mismatch repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03460 Fanconi anemia pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03460 Fanconi anemia pathway 3
ppo03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03030 DNA replication 7
mtr03010 Ribosome 2
mtr01210 2-Oxocarboxylic acid metabolism 2
mtr01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00062 Fatty acid elongation 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03440 Homologous recombination 2
sly03030 DNA replication 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
sot00230 Purine metabolism 2
sot00240 Pyrimidine metabolism 2
sot00480 Glutathione metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03030 DNA replication 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
nta00999 Biosynthesis of various plant secondary metabolites 2
nta01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03460 Fanconi anemia pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
osa01230 Biosynthesis of amino acids 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03430 Mismatch repair 4
osa03030 DNA replication 3
osa03410 Base excision repair 3
osa03420 Nucleotide excision repair 3
osa03440 Homologous recombination 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae01240 Biosynthesis of cofactors 6
tae00561 Glycerolipid metabolism 3
tae00053 Ascorbate and aldarate metabolism 3
tae04712 Circadian rhythm - plant 3
tae00130 Ubiquinone and other terpenoid-quinone biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu00510 N-Glycan biosynthesis 3
hvu00513 Various types of N-glycan biosynthesis 3
hvu04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03030 DNA replication 2
sbi03410 Base excision repair 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03050 Proteasome 2
sbi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03082 ATP-dependent chromatin remodeling 3
bdi03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03050 Proteasome 3
bdi03082 ATP-dependent chromatin remodeling 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 106371664 111215205 103865508 103856506 103867321 818174 832283 107953162 107891571 107889196 102617974 102630455 100819817 100809283 100812368 100245057 100249486 7465237 7466004 18098100 11446346 11409018 101258866 101265247 101259362 102578597 102584400 107063348 107795539 107816762 107792954 4329577 4335808 4351555 100279729 100192057 100285220 123102977 123144532 123045420 123401733 123395596 123426689 8079845 8061020 100823596 100830591 100839650 5715776
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