ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
bna-r.1	125593264	double-stranded RNA-binding protein 3-like
bna-r.1	106352593	double-stranded RNA-binding protein 2
bna-r.1	106415068	double-stranded RNA-binding protein 3
bna-r.1	106347735	double-stranded RNA-binding protein 3
bra-r.6	103864884	double-stranded RNA-binding protein 2
bra-r.6	103854282	double-stranded RNA-binding protein 3
bra-r.6	103836966	double-stranded RNA-binding protein 3
ath-u.5	DRB2	dsRNA-binding protein 2
ath-u.5	DRB3	dsRNA-binding protein 3
ath-u.5	DRB5	dsRNA-binding protein 5
ghi-r.1	107933867	double-stranded RNA-binding protein 2
ghi-r.1	107888286	double-stranded RNA-binding protein 2
ghi-r.1	107893246	double-stranded RNA-binding protein 2
cit-r.1	102626169	double-stranded RNA-binding protein 5-like
cit-r.1	102625010	double-stranded RNA-binding protein 2
cit-r.1	102611920	double-stranded RNA-binding protein 2-like
gma-u.5	DRB2A	dsRNA-binding protein Drb2a
gma-u.5	100814005	double-stranded RNA-binding protein 2-like
gma-u.5	100815739	double-stranded RNA-binding protein 2-like
vvi-u.5	100266564	double-stranded RNA-binding protein 2
vvi-u.5	100254871	double-stranded RNA-binding protein 3
vvi-u.5	100248336	double-stranded RNA-binding protein 2
ppo-u.5	18098894	double-stranded RNA-binding protein 2
ppo-u.5	18107203	double-stranded RNA-binding protein 3
ppo-u.5	18104048	double-stranded RNA-binding protein 2
mtr-u.5	11408899	double-stranded RNA-binding protein 2
mtr-u.5	11432263	double-stranded RNA-binding protein 2
mtr-u.5	25492444	double-stranded RNA-binding protein 2
sly-u.5	101259606	double-stranded RNA-binding protein 2
sly-u.5	101252489	double-stranded RNA-binding protein 2
sot-r.1	102588953	double-stranded RNA-binding protein 2
sot-r.1	102585580	double-stranded RNA-binding protein 2-like
nta-r.1	107802591	double-stranded RNA-binding protein 2-like
nta-r.1	107764002	double-stranded RNA-binding protein 2-like
nta-r.1	107773867	double-stranded RNA-binding protein 2
osa-u.5	4348920	double-stranded RNA-binding protein 6-like
osa-u.5	4337826	double-stranded RNA-binding protein 2-like
osa-u.5	4347527	double-stranded RNA-binding protein 5-like
zma-u.5	100502483	Double-stranded RNA-binding protein 2
zma-u.5	100274309	Double-stranded RNA-binding protein 2
zma-u.5	100274020	uncharacterized LOC100274020
tae-r.2	123046060	double-stranded RNA-binding protein 6
tae-r.2	123112603	double-stranded RNA-binding protein 3
tae-r.2	123112711	double-stranded RNA-binding protein 2
hvu-r.1	123425445	double-stranded RNA-binding protein 2-like
hvu-r.1	123431313	double-stranded RNA-binding protein 6
sbi-r.1	8069500	double-stranded RNA-binding protein 2
sbi-r.1	8070475	double-stranded RNA-binding protein 6
bdi-r.1	100844486	double-stranded RNA-binding protein 6
bdi-r.1	100822330	double-stranded RNA-binding protein 2

Top 50 coexpressed genes to 125593264 (bna-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 125593264 (bna-r.1 coexpression data)

CoexMap"125593264"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

GO:0003725 [list] [network] double-stranded RNA binding

(31 genes)

IEA

Protein

XP_048625574.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, chlo 1, plas 1, cysk 1, chlo_mito 1, cysk_plas 1

(predict for XP_048625574.1)

Subcellular
localization
TargetP

mito 4, other 3

(predict for XP_048625574.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	bna-r.1 for 125593264	bna-r.1 for 106352593	bna-r.1 for 106415068	bna-r.1 for 106347735	bra-r.6 for 103864884	bra-r.6 for 103854282	bra-r.6 for 103836966	ath-u.5 for DRB2	ath-u.5 for DRB3	ath-u.5 for DRB5	ghi-r.1 for 107933867	ghi-r.1 for 107888286	ghi-r.1 for 107893246	cit-r.1 for 102626169	cit-r.1 for 102625010	cit-r.1 for 102611920	gma-u.5 for DRB2A	gma-u.5 for 100814005	gma-u.5 for 100815739	vvi-u.5 for 100266564	vvi-u.5 for 100254871	vvi-u.5 for 100248336	ppo-u.5 for 18098894	ppo-u.5 for 18107203	ppo-u.5 for 18104048	mtr-u.5 for 11408899	mtr-u.5 for 11432263	mtr-u.5 for 25492444	sly-u.5 for 101259606	sly-u.5 for 101252489	sot-r.1 for 102588953	sot-r.1 for 102585580	nta-r.1 for 107802591	nta-r.1 for 107764002	nta-r.1 for 107773867	osa-u.5 for 4348920	osa-u.5 for 4337826	osa-u.5 for 4347527	zma-u.5 for 100502483	zma-u.5 for 100274309	zma-u.5 for 100274020	tae-r.2 for 123046060	tae-r.2 for 123112603	tae-r.2 for 123112711	hvu-r.1 for 123425445	hvu-r.1 for 123431313	sbi-r.1 for 8069500	sbi-r.1 for 8070475	bdi-r.1 for 100844486	bdi-r.1 for 100822330

Ortholog

Ortholog ID: 1337

Species

bna

bra

ath

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

DRB2

DRB3

DRB5

DRB2B

Function^*

double-stranded RNA-binding protein 5

double-stranded RNA-binding protein 2-like

double-stranded RNA-binding protein 2

double-stranded RNA-binding protein 3

dsRNA-binding protein 2

dsRNA-binding protein 3

dsRNA-binding protein 5

double-stranded RNA-binding protein 2

double-stranded RNA-binding protein 5-like

double-stranded RNA-binding protein 2-like

double-stranded RNA-binding protein 3

double-stranded RNA-binding protein 2-like

dsRNA-binding protein Drb2b

double-stranded RNA-binding protein 2

double-stranded RNA-binding protein 3

double-stranded RNA-binding protein 2

double-stranded RNA-binding protein 2-like

double-stranded RNA-binding protein 2

double-stranded RNA-binding protein 6-like

double-stranded RNA-binding protein 2-like

double-stranded RNA-binding protein 5-like

Double-stranded RNA-binding protein 2

uncharacterized LOC100274020

Double-stranded RNA-binding protein 3

double-stranded RNA-binding protein 2

double-stranded RNA-binding protein 6

double-stranded RNA-binding protein 5

double-stranded RNA-binding protein 2-like

double-stranded RNA-binding protein 6

double-stranded RNA-binding protein 2

double-stranded RNA-binding protein 6

double-stranded RNA-binding protein 2

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00062	Fatty acid elongation	2
bna01040	Biosynthesis of unsaturated fatty acids	2
bna01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03022	Basal transcription factors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra02010	ABC transporters	2
bra04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00860	Porphyrin metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath04075	Plant hormone signal transduction	2
ath04814	Motor proteins	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath02010	ABC transporters	3
ath04626	Plant-pathogen interaction	2
ath00071	Fatty acid degradation	2
ath04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00510	N-Glycan biosynthesis	4
gma00513	Various types of N-glycan biosynthesis	4
gma04141	Protein processing in endoplasmic reticulum	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00511	Other glycan degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	5
vvi04016	MAPK signaling pathway - plant	3
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	3
vvi04016	MAPK signaling pathway - plant	2
vvi04626	Plant-pathogen interaction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo04144	Endocytosis	2
ppo03040	Spliceosome	2
ppo03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	6
sot03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04144	Endocytosis	3
sot03013	Nucleocytoplasmic transport	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03460	Fanconi anemia pathway	2
nta04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04075	Plant hormone signal transduction	4
osa04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa04626	Plant-pathogen interaction	2
osa04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa00062	Fatty acid elongation	6
osa04626	Plant-pathogen interaction	4
osa01040	Biosynthesis of unsaturated fatty acids	2
osa01212	Fatty acid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma04075	Plant hormone signal transduction	3
zma03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma02010	ABC transporters	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00900	Terpenoid backbone biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae02010	ABC transporters	2
tae04981	Folate transport and metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu00260	Glycine, serine and threonine metabolism	2
hvu00270	Cysteine and methionine metabolism	2
hvu01200	Carbon metabolism	2
hvu01230	Biosynthesis of amino acids	2
hvu00520	Amino sugar and nucleotide sugar metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03018	RNA degradation	2

Expression

Expression pattern

Entrez Gene ID^*

106391055

106446879

106446881

103864884

103854282

103836966

817386

822310

834109

107940119

107961966

107962778

102626169

102611920

102607899

100815739

100816445

100820350

100266564

100248336

100245249

18098894

18107203

11408899

11432263

25492444

101259606

101252489

102588953

102585580

107764002

107791931

107808595

4348920

4337826

4347527

100274309

100274020

100280218

123112711

123181093

123104324

123425445

123431313

8069500

8070475

100844486

100822330

The preparation time of this page was 0.6 [sec].


Species	bna	bra	ath	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	4	3	3	3	3	3	3	3	3	2	2	3	3	3	3	2	2	2	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to 125593264 (bna-r.1 coexpression data)

Top 50 enrichment test to 125593264 (bna-r.1 coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**