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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT2G40650   PRP38 family protein 
 ath-u.5   AT2G40650   PRP38 family protein 
 ath-r.7   AT2G40650   PRP38 family protein 
 ath-m.9   AT2G40650   PRP38 family protein 
 ath-e.2   AT2G40650   PRP38 family protein 
 ath-m.4.bio   AT2G40650   PRP38 family protein 
 ath-m.4.hor   AT2G40650   PRP38 family protein 
 ath-m.4.str   AT2G40650   PRP38 family protein 
 ath-m.4.tis   AT2G40650   PRP38 family protein 
 bra-r.6   103857945   pre-mRNA-splicing factor 38 
 bra-r.6   103865826   pre-mRNA-splicing factor 38 
 bna-r.1   106388170   pre-mRNA-splicing factor 38 
 bna-r.1   106391613   pre-mRNA-splicing factor 38 
 bna-r.1   106447515   pre-mRNA-splicing factor 38-like 
 ghi-r.1   107914482   pre-mRNA-splicing factor 38 
 ghi-r.1   107896863   pre-mRNA-splicing factor 38 
 cit-r.1   102608987   pre-mRNA-splicing factor 38 
 gma-u.5   100794094   pre-mRNA-splicing factor 38 
 gma-u.5   100792466   pre-mRNA-splicing factor 38A-like 
 vvi-u.5   100266508   pre-mRNA-splicing factor 38 
 ppo-u.5   18104015   pre-mRNA-splicing factor 38 
 mtr-u.5   11407187   pre-mRNA-splicing factor 38 
 sly-u.5   101263250   pre-mRNA-splicing factor 38 
 sot-r.1   102590973   pre-mRNA-splicing factor 38 
 nta-r.1   107815306   pre-mRNA-splicing factor 38-like 
 nta-r.1   107791862   pre-mRNA-splicing factor 38 
 nta-r.1   107772253   uncharacterized LOC107772253 
 osa-u.5   4346374   pre-mRNA-splicing factor 38 
 zma-u.5   100284891   uncharacterized LOC100284891 
 tae-r.2   123103275   pre-mRNA-splicing factor 38 
 tae-r.2   123120611   pre-mRNA-splicing factor 38 
 tae-r.2   780656   pre-mRNA-splicing factor 38 
 hvu-r.1   123399116   pre-mRNA-splicing factor 38 
 sbi-r.1   8062587   pre-mRNA-splicing factor 38 
 bdi-r.1   100844813   pre-mRNA-splicing factor 38 
 cre-r.1   CHLRE_12g503400v5   uncharacterized protein 

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Top 50 coexpressed genes to AT2G40650 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT2G40650 (ath-m.4.lig coexpression data)

CoexMap"818660"


athAT2G40650 | Entrez gene ID : 818660      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 3 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_565937.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  nucl 3,  chlo 2,  cyto_plas 2  (predict for NP_565937.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for NP_565937.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT2G40650
ath-u.5
for
AT2G40650
ath-r.7
for
AT2G40650
ath-m.9
for
AT2G40650
ath-e.2
for
AT2G40650
ath-m.4.bio
for
AT2G40650
ath-m.4.hor
for
AT2G40650
ath-m.4.str
for
AT2G40650
ath-m.4.tis
for
AT2G40650
bra-r.6
for
103857945
bra-r.6
for
103865826
bna-r.1
for
106388170
bna-r.1
for
106391613
bna-r.1
for
106447515
ghi-r.1
for
107914482
ghi-r.1
for
107896863
cit-r.1
for
102608987
gma-u.5
for
100794094
gma-u.5
for
100792466
vvi-u.5
for
100266508
ppo-u.5
for
18104015
mtr-u.5
for
11407187
sly-u.5
for
101263250
sot-r.1
for
102590973
nta-r.1
for
107815306
nta-r.1
for
107791862
nta-r.1
for
107772253
osa-u.5
for
4346374
zma-u.5
for
100284891
tae-r.2
for
123103275
tae-r.2
for
123120611
tae-r.2
for
780656
hvu-r.1
for
123399116
sbi-r.1
for
8062587
bdi-r.1
for
100844813
cre-r.1
for
CHLRE_12g503400v5


Ortholog ID: 7959
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT2G40650 LOC103857945 LOC103865826 LOC106391613 LOC106447515 LOC106438018 LOC107914482 LOC107896863 LOC102608987 LOC100794094 LOC100792466 LOC100266508 LOC18104015 LOC11407187 LOC101263250 LOC102590973 LOC107815306 LOC107791862 LOC107772253 LOC4346374 LOC100284891 LOC123103275 LOC123120611 LOC780656 LOC123399116 LOC8062587 LOC100844813 CHLRE_12g503400v5
Function* PRP38 family protein pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38-like pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38A-like pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38-like pre-mRNA-splicing factor 38 uncharacterized LOC107772253 pre-mRNA-splicing factor 38 uncharacterized LOC100284891 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 pre-mRNA-splicing factor 38 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 7
sot00440 Phosphonate and phosphinate metabolism 2
sot00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 5
nta04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
osa00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae04120 Ubiquitin mediated proteolysis 3
tae03082 ATP-dependent chromatin remodeling 3
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 6
tae04120 Ubiquitin mediated proteolysis 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 7
tae03040 Spliceosome 5
tae03008 Ribosome biogenesis in eukaryotes 2
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 9
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 818660 103857945 103865826 106391613 106447515 106438018 107914482 107896863 102608987 100794094 100792466 100266508 18104015 11407187 101263250 102590973 107815306 107791862 107772253 4346374 100284891 123103275 123120611 780656 123399116 8062587 100844813 5716427
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