ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.lig	AT3G16330	Avr9/Cf-9 rapidly elicited protein
ath-u.5	AT3G16330	Avr9/Cf-9 rapidly elicited protein
ath-r.7	AT3G16330	Avr9/Cf-9 rapidly elicited protein
ath-m.9	AT3G16330	Avr9/Cf-9 rapidly elicited protein
ath-e.2	AT3G16330	Avr9/Cf-9 rapidly elicited protein
ath-m.4.bio	AT3G16330	Avr9/Cf-9 rapidly elicited protein
ath-m.4.hor	AT3G16330	Avr9/Cf-9 rapidly elicited protein
ath-m.4.str	AT3G16330	Avr9/Cf-9 rapidly elicited protein
ath-m.4.tis	AT3G16330	Avr9/Cf-9 rapidly elicited protein
ath-u.5	AT4G29110	cotton fiber protein
ath-u.5	AT1G52140	Avr9/Cf-9 rapidly elicited protein
bra-r.6	103868517	uncharacterized LOC103868517
bra-r.6	103859663	uncharacterized LOC103859663
bra-r.6	103861871	uncharacterized LOC103861871
bna-r.1	106454985	uncharacterized LOC106454985
ghi-r.1	107950621	uncharacterized LOC107950621
ghi-r.1	107951914	uncharacterized LOC107951914
ghi-r.1	107958438	uncharacterized LOC107958438
cit-r.1	102627839	hypothetical protein
cit-r.1	102612263	hypothetical protein
cit-r.1	102607482	hypothetical protein
gma-u.5	100802625	uncharacterized LOC100802625
gma-u.5	100801941	uncharacterized LOC100801941
gma-u.5	100786928	uncharacterized LOC100786928
vvi-u.5	100266427	uncharacterized LOC100266427
vvi-u.5	100248099	uncharacterized LOC100248099
ppo-u.5	18094781	uncharacterized LOC18094781
ppo-u.5	7462293	uncharacterized LOC7462293
ppo-u.5	7463780	uncharacterized LOC7463780
mtr-u.5	11425513	uncharacterized LOC11425513
mtr-u.5	11420970	uncharacterized LOC11420970
mtr-u.5	11420694	uncharacterized LOC11420694
sly-u.5	101247111	uncharacterized LOC101247111
sly-u.5	101247701	uncharacterized LOC101247701
sly-u.5	101252785	uncharacterized LOC101252785
sot-r.1	102601293	uncharacterized LOC102601293
sot-r.1	102580149	uncharacterized LOC102580149
sot-r.1	102597589	uncharacterized LOC102597589
nta-r.1	107761374	uncharacterized LOC107761374
nta-r.1	107761375	uncharacterized LOC107761375
nta-r.1	107761012	uncharacterized LOC107761012
osa-u.5	4327339	uncharacterized LOC4327339
osa-u.5	4341279	uncharacterized LOC4341279
zma-u.5	111589984	uncharacterized LOC111589984
zma-u.5	100275498	uncharacterized LOC100275498
zma-u.5	100276905	uncharacterized LOC100276905
tae-r.2	123065135	uncharacterized LOC123065135
tae-r.2	123058084	uncharacterized LOC123058084
tae-r.2	123074274	uncharacterized LOC123074274
hvu-r.1	123409927	uncharacterized LOC123409927
hvu-r.1	123439611	uncharacterized LOC123439611
sbi-r.1	8061959	uncharacterized LOC8061959
sbi-r.1	8065921	uncharacterized LOC8065921
sbi-r.1	8084334	uncharacterized LOC8084334
bdi-r.1	100838777	uncharacterized LOC100838777
bdi-r.1	100838573	uncharacterized LOC100838573
bdi-r.1	100821286	uncharacterized LOC100821286

Top 50 coexpressed genes to AT3G16330 (ath-m.4.lig coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G16330 (ath-m.4.lig coexpression data)

CoexMap"820880"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO CC

GO MF

Protein

NP_188254.1 [sequence] [blastp]

Subcellular
localization
wolf

chlo 4, nucl 3, mito 2

(predict for NP_188254.1)

Subcellular
localization
TargetP

other 5

(predict for NP_188254.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.lig for AT3G16330	ath-u.5 for AT3G16330	ath-r.7 for AT3G16330	ath-m.9 for AT3G16330	ath-e.2 for AT3G16330	ath-m.4.bio for AT3G16330	ath-m.4.hor for AT3G16330	ath-m.4.str for AT3G16330	ath-m.4.tis for AT3G16330	ath-u.5 for AT4G29110	ath-u.5 for AT1G52140	bra-r.6 for 103868517	bra-r.6 for 103859663	bra-r.6 for 103861871	bna-r.1 for 106454985	ghi-r.1 for 107950621	ghi-r.1 for 107951914	ghi-r.1 for 107958438	cit-r.1 for 102627839	cit-r.1 for 102612263	cit-r.1 for 102607482	gma-u.5 for 100802625	gma-u.5 for 100801941	gma-u.5 for 100786928	vvi-u.5 for 100266427	vvi-u.5 for 100248099	ppo-u.5 for 18094781	ppo-u.5 for 7462293	ppo-u.5 for 7463780	mtr-u.5 for 11425513	mtr-u.5 for 11420970	mtr-u.5 for 11420694	sly-u.5 for 101247111	sly-u.5 for 101247701	sly-u.5 for 101252785	sot-r.1 for 102601293	sot-r.1 for 102580149	sot-r.1 for 102597589	nta-r.1 for 107761374	nta-r.1 for 107761375	nta-r.1 for 107761012	osa-u.5 for 4327339	osa-u.5 for 4341279	zma-u.5 for 111589984	zma-u.5 for 100275498	zma-u.5 for 100276905	tae-r.2 for 123065135	tae-r.2 for 123058084	tae-r.2 for 123074274	hvu-r.1 for 123409927	hvu-r.1 for 123439611	sbi-r.1 for 8061959	sbi-r.1 for 8065921	sbi-r.1 for 8084334	bdi-r.1 for 100838777	bdi-r.1 for 100838573	bdi-r.1 for 100821286

Ortholog

Ortholog ID: 655

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

Symbol

Function^*

Avr9/Cf-9 rapidly elicited protein

cotton fiber protein

Avr9/Cf-9 rapidly elicited protein

uncharacterized LOC103868517

uncharacterized LOC103861871

uncharacterized LOC103869832

uncharacterized LOC106364217

uncharacterized LOC107950621

uncharacterized LOC107897344

uncharacterized LOC121208613

hypothetical protein

uncharacterized LOC100802625

uncharacterized LOC100786760

uncharacterized LOC100780921

uncharacterized LOC100266427

uncharacterized LOC100248099

uncharacterized LOC7462293

uncharacterized LOC7463780

uncharacterized LOC7461556

uncharacterized LOC11420970

uncharacterized LOC11420694

uncharacterized LOC11422002

uncharacterized LOC101257239

uncharacterized LOC101253388

uncharacterized LOC102601293

uncharacterized LOC102597903

uncharacterized LOC102602300

uncharacterized LOC107809291

uncharacterized LOC107809290

uncharacterized LOC107791111

uncharacterized LOC4327339

uncharacterized LOC4341279

uncharacterized LOC111589984

uncharacterized LOC100275498

uncharacterized LOC100276905

uncharacterized LOC123065135

uncharacterized LOC123089424

uncharacterized LOC123409927

uncharacterized LOC123439611

uncharacterized LOC8061959

uncharacterized LOC8065921

uncharacterized LOC8084334

uncharacterized LOC100838777

uncharacterized LOC100838573

uncharacterized LOC100821286

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra00480	Glutathione metabolism	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit00480	Glutathione metabolism	3
cit00999	Biosynthesis of various plant secondary metabolites	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit04075	Plant hormone signal transduction	2
cit04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma00053	Ascorbate and aldarate metabolism	3
gma04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04075	Plant hormone signal transduction	6
vvi04016	MAPK signaling pathway - plant	4

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo00052	Galactose metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04075	Plant hormone signal transduction	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00380	Tryptophan metabolism	2
nta04075	Plant hormone signal transduction	2
nta00270	Cysteine and methionine metabolism	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00380	Tryptophan metabolism	2
nta04075	Plant hormone signal transduction	2
nta00270	Cysteine and methionine metabolism	2
nta04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae00040	Pentose and glucuronate interconversions	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi04075	Plant hormone signal transduction	3
sbi04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi00940	Phenylpropanoid biosynthesis	3

Expression

Expression pattern

Entrez Gene ID^*

820880

829032

841644

103868517

103861871

103869832

106364217

107950621

107897344

121208613

102627839

102612263

102607482

100802625

100786760

100780921

100266427

100248099

7462293

7463780

7461556

11420970

11420694

11422002

101257239

101253388

102601293

102597903

102602300

107809291

107809290

107791111

4327339

4341279

111589984

100275498

100276905

123065135

123089424

123409927

123439611

8061959

8065921

8084334

100838777

100838573

100821286

The preparation time of this page was 0.1 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	1	3	3	3	2	3	3	3	3	3	2	3	3	2	3	3	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G16330 (ath-m.4.lig coexpression data)

Top 50 enrichment test to AT3G16330 (ath-m.4.lig coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**