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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   NCED6   nine-cis-epoxycarotenoid dioxygenase 6 
 ath-m.9   NCED6   nine-cis-epoxycarotenoid dioxygenase 6 
 ath-m.4.bio   NCED6   nine-cis-epoxycarotenoid dioxygenase 6 
 ath-m.4.hor   NCED6   nine-cis-epoxycarotenoid dioxygenase 6 
 ath-m.4.str   NCED6   nine-cis-epoxycarotenoid dioxygenase 6 
 ath-m.4.tis   NCED6   nine-cis-epoxycarotenoid dioxygenase 6 
 ath-u.5   NCED3   nine-cis-epoxycarotenoid dioxygenase 3 
 bra-r.6   103860984   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 bra-r.6   103859576   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 
 ghi-r.1   107942317   9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 
 ghi-r.1   107901883   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 ghi-r.1   107905887   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 cit-r.1   NCED   putative 9-cis-epoxycarotenoid dioxygenase 3 
 cit-r.1   102578070   9-cis-epoxycarotenoid dioxygenase 2 
 gma-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 gma-u.5   100780284   probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 gma-u.5   100777166   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 vvi-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 1 
 vvi-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 vvi-u.5   100244362   9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 
 ppo-u.5   7472358   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 mtr-u.5   120577706   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 
 mtr-u.5   25487063   9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 
 sly-u.5   NCED1   9-cis-epoxycarotenoid dioxygenase 
 sly-u.5   NCED2   9-cis-epoxycarotenoid dioxygenase 2 
 sot-r.1   102577733   9-cis-epoxy-carotenoid dioxygenase 2 
 sot-r.1   102577783   9-cis-epoxy-carotenoid dioxygenase 1 
 nta-r.1   107822968   probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 
 nta-r.1   107814412   9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like 
 osa-u.5   9270250   9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 osa-u.5   4333566   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 
 osa-u.5   4342424   9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 
 zma-u.5   732819   viviparous14 
 zma-u.5   100281391   uncharacterized LOC100281391 
 zma-u.5   100281136   uncharacterized LOC100281136 
 tae-r.2   123113194   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 
 tae-r.2   123122716   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 
 hvu-r.1   123395880   9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 
 hvu-r.1   123452108   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 
 sbi-r.1   8062208   9-cis-epoxycarotenoid dioxygenase 1, chloroplastic 
 bdi-r.1   100822305   9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 

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Top 50 coexpressed genes to NCED6 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NCED6 (ath-m.4.lig coexpression data)

CoexMap"822008"


athNCED6 | Entrez gene ID : 822008      
Species ath bra ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre bna
Paralog 7 2 3 2 3 3 1 2 2 2 2 3 3 2 2 1 1 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00906 [list] [network] Carotenoid biosynthesis (32 genes)
GO BP
GO:0009688 [list] [network] abscisic acid biosynthetic process  (11 genes)  TAS  
GO:0010114 [list] [network] response to red light  (73 genes)  IEP  
GO:0009639 [list] [network] response to red or far red light  (221 genes)  IEP  
GO CC
GO:0009535 [list] [network] chloroplast thylakoid membrane  (314 genes)  IDA  
GO:0009570 [list] [network] chloroplast stroma  (693 genes)  IDA  
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
GO:0045549 [list] [network] 9-cis-epoxycarotenoid dioxygenase activity  (7 genes)  IDA TAS  
Protein NP_189064.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo_mito 5,  chlo 5,  mito 4,  cyto_mito 3  (predict for NP_189064.1)
Subcellular
localization
TargetP
mito 3,  chlo 3  (predict for NP_189064.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
NCED6
ath-m.9
for
NCED6
ath-m.4.bio
for
NCED6
ath-m.4.hor
for
NCED6
ath-m.4.str
for
NCED6
ath-m.4.tis
for
NCED6
ath-u.5
for
NCED3
bra-r.6
for
103860984
bra-r.6
for
103859576
ghi-r.1
for
107942317
ghi-r.1
for
107901883
ghi-r.1
for
107905887
cit-r.1
for
NCED
cit-r.1
for
102578070
gma-u.5
for
NCED2
gma-u.5
for
100780284
gma-u.5
for
100777166
vvi-u.5
for
NCED1
vvi-u.5
for
NCED2
vvi-u.5
for
100244362
ppo-u.5
for
7472358
mtr-u.5
for
120577706
mtr-u.5
for
25487063
sly-u.5
for
NCED1
sly-u.5
for
NCED2
sot-r.1
for
102577733
sot-r.1
for
102577783
nta-r.1
for
107822968
nta-r.1
for
107814412
osa-u.5
for
9270250
osa-u.5
for
4333566
osa-u.5
for
4342424
zma-u.5
for
732819
zma-u.5
for
100281391
zma-u.5
for
100281136
tae-r.2
for
123113194
tae-r.2
for
123122716
hvu-r.1
for
123395880
hvu-r.1
for
123452108
sbi-r.1
for
8062208
bdi-r.1
for
100822305


Ortholog ID: 987
Species ath bra bra bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo mtr mtr sly sly sot sot nta nta osa osa osa zma zma zma tae tae tae hvu hvu sbi bdi
Symbol NCED3 LOC103859576 LOC103870025 LOC106423568 LOC107905887 LOC107914792 LOC107909170 NCED LOC102578070 NCED2 LOC100777166 LOC100814399 NCED1 NCED2 LOC100244362 LOC18095516 LOC120577706 LOC25487063 NCED1 NCED2 LOC102577733 LOC102577783 LOC107822968 LOC107814412 LOC9270250 LOC4333566 LOC4342424 LOC100281391 LOC100281136 LOC103648268 LOC123122716 LOC123104904 LOC123110233 LOC123395880 LOC123452108 LOC8062208 LOC100822305
Function* nine-cis-epoxycarotenoid dioxygenase 3 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic putative 9-cis-epoxycarotenoid dioxygenase 3 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase 1 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic 9-cis-epoxycarotenoid dioxygenase 9-cis-epoxycarotenoid dioxygenase 2 9-cis-epoxy-carotenoid dioxygenase 2 9-cis-epoxy-carotenoid dioxygenase 1 probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic uncharacterized LOC100281391 uncharacterized LOC100281136 9-cis-epoxycarotenoid dioxygenase NCED4, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic-like 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 5
ath04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 4
bra04075 Plant hormone signal transduction 4
bra00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 5
bra04075 Plant hormone signal transduction 5
bra00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00906 Carotenoid biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 6
ghi04075 Plant hormone signal transduction 6
ghi04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 6
ghi04075 Plant hormone signal transduction 6
ghi04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00906 Carotenoid biosynthesis 5
ghi00908 Zeatin biosynthesis 4
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04016 MAPK signaling pathway - plant 3
cit04075 Plant hormone signal transduction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
gma00902 Monoterpenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 3
gma04075 Plant hormone signal transduction 3
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 5
vvi04075 Plant hormone signal transduction 5
vvi00906 Carotenoid biosynthesis 4
vvi00052 Galactose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04016 MAPK signaling pathway - plant 4
vvi04075 Plant hormone signal transduction 4
vvi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00906 Carotenoid biosynthesis 3
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04075 Plant hormone signal transduction 5
mtr04016 MAPK signaling pathway - plant 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04075 Plant hormone signal transduction 6
sly04016 MAPK signaling pathway - plant 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 4
sly00520 Amino sugar and nucleotide sugar metabolism 2
sly01250 Biosynthesis of nucleotide sugars 2
sly00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 2
sot04075 Plant hormone signal transduction 2
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04075 Plant hormone signal transduction 5
sot04016 MAPK signaling pathway - plant 4
sot00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00270 Cysteine and methionine metabolism 4
nta00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 7
osa04016 MAPK signaling pathway - plant 5
osa00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04075 Plant hormone signal transduction 3
osa04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00906 Carotenoid biosynthesis 6
zma04016 MAPK signaling pathway - plant 5
zma04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04075 Plant hormone signal transduction 8
zma04016 MAPK signaling pathway - plant 7
zma00906 Carotenoid biosynthesis 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 5
zma04016 MAPK signaling pathway - plant 3
zma04075 Plant hormone signal transduction 3
zma00906 Carotenoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 9
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00906 Carotenoid biosynthesis 9
tae04016 MAPK signaling pathway - plant 6
tae04075 Plant hormone signal transduction 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04016 MAPK signaling pathway - plant 2
hvu04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04016 MAPK signaling pathway - plant 3
sbi04075 Plant hormone signal transduction 3
sbi00906 Carotenoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04075 Plant hormone signal transduction 7
bdi04016 MAPK signaling pathway - plant 5
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820667 103859576 103870025 106423568 107905887 107914792 107909170 102578064 102578070 100797882 100777166 100814399 100232942 100232943 100244362 18095516 120577706 25487063 544163 100316877 102577733 102577783 107822968 107814412 9270250 4333566 4342424 100281391 100281136 103648268 123122716 123104904 123110233 123395880 123452108 8062208 100822305
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