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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-r.7   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.9   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-e.2   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.bio   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.hor   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.str   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-m.4.tis   AT4G25410   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT4G25400   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT5G51780   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 ath-u.5   AT5G51790   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 bra-r.6   103834876   transcription factor bHLH126 
 bra-r.6   108868754   transcription factor bHLH126 
 bna-r.1   106379318   transcription factor bHLH36-like 
 bna-r.1   106414441   transcription factor bHLH36-like 
 ghi-r.1   107890830   transcription factor bHLH126 
 ghi-r.1   107930214   transcription factor bHLH126 
 ghi-r.1   107930987   transcription factor bHLH118 
 cit-r.1   102631004   transcription factor bHLH36 
 gma-u.5   100780888   transcription factor bHLH118 
 gma-u.5   100795953   transcription factor bHLH118 
 mtr-u.5   25479498   transcription factor bHLH36 
 mtr-u.5   11415125   transcription factor bHLH118 
 mtr-u.5   25479499   transcription factor bHLH118 
 sly-u.5   101245065   basic helix-loop-helix (bHLH) DNA-binding superfamily protein 
 sly-u.5   101267867   transcription factor bHLH36-like 
 sot-r.1   102584358   transcription factor bHLH36-like 
 sot-r.1   102582117   transcription factor bHLH118-like 
 nta-r.1   107809088   transcription factor bHLH118-like 
 nta-r.1   107809086   transcription factor bHLH36 

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Top 50 coexpressed genes to AT4G25410 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT4G25410 (ath-m.4.lig coexpression data)

CoexMap"828644"


athAT4G25410 | Entrez gene ID : 828644      
Species ath bra bna ghi cit gma mtr sly sot nta vvi bdi osa tae ppo zma cre sbi hvu
Paralog 12 2 2 3 1 2 3 2 2 2 0 0 0 0 0 0 0 0 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0006355 [list] [network] regulation of DNA-templated transcription  (1618 genes)  ISS TAS  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003700 [list] [network] DNA-binding transcription factor activity  (1620 genes)  ISS  
Protein NP_001320062.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  plas 1  (predict for NP_001320062.1)
Subcellular
localization
TargetP
other 7,  mito 3  (predict for NP_001320062.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT4G25410
ath-u.5
for
AT4G25410
ath-r.7
for
AT4G25410
ath-m.9
for
AT4G25410
ath-e.2
for
AT4G25410
ath-m.4.bio
for
AT4G25410
ath-m.4.hor
for
AT4G25410
ath-m.4.str
for
AT4G25410
ath-m.4.tis
for
AT4G25410
ath-u.5
for
AT4G25400
ath-u.5
for
AT5G51780
ath-u.5
for
AT5G51790
bra-r.6
for
103834876
bra-r.6
for
108868754
bna-r.1
for
106379318
bna-r.1
for
106414441
ghi-r.1
for
107890830
ghi-r.1
for
107930214
ghi-r.1
for
107930987
cit-r.1
for
102631004
gma-u.5
for
100780888
gma-u.5
for
100795953
mtr-u.5
for
25479498
mtr-u.5
for
11415125
mtr-u.5
for
25479499
sly-u.5
for
101245065
sly-u.5
for
101267867
sot-r.1
for
102584358
sot-r.1
for
102582117
nta-r.1
for
107809088
nta-r.1
for
107809086


Ortholog ID: 2233
Species ath ath ath bra bra bna ghi ghi cit gma gma mtr mtr mtr sly sly sot sot nta
Symbol AT4G25400 AT5G51780 AT5G51790 LOC103861555 LOC103832862 LOC106379318 LOC107930214 LOC107945011 LOC102631004 LOC100795953 LOC100796473 LOC25479498 LOC11415125 LOC25479499 LOC101245065 LOC101267867 LOC102584358 LOC102582117 LOC107809086
Function* basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH118 transcription factor bHLH36-like transcription factor bHLH36-like transcription factor bHLH126 transcription factor bHLH118 transcription factor bHLH36 transcription factor bHLH118 transcription factor bHLH118 transcription factor bHLH36 transcription factor bHLH118 transcription factor bHLH118 basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcription factor bHLH36-like transcription factor bHLH36-like transcription factor bHLH118-like transcription factor bHLH36
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00071 Fatty acid degradation 3
bna00010 Glycolysis / Gluconeogenesis 2
bna00350 Tyrosine metabolism 2
bna00620 Pyruvate metabolism 2
bna01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00592 alpha-Linolenic acid metabolism 6
ghi00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00941 Flavonoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00940 Phenylpropanoid biosynthesis 2
sly00941 Flavonoid biosynthesis 2
sly00945 Stilbenoid, diarylheptanoid and gingerol biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04016 MAPK signaling pathway - plant 4
sot04075 Plant hormone signal transduction 4
sot02010 ABC transporters 2
sot04981 Folate transport and metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828643 835252 835253 103861555 103832862 106379318 107930214 107945011 102631004 100795953 100796473 25479498 11415125 25479499 101245065 101267867 102584358 102582117 107809086
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