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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   PSD3   phosphatidylserine decarboxylase 3 
 ath-u.5   PSD3   phosphatidylserine decarboxylase 3 
 ath-r.7   PSD3   phosphatidylserine decarboxylase 3 
 ath-m.9   PSD3   phosphatidylserine decarboxylase 3 
 ath-e.2   PSD3   phosphatidylserine decarboxylase 3 
 ath-m.4.bio   PSD3   phosphatidylserine decarboxylase 3 
 ath-m.4.hor   PSD3   phosphatidylserine decarboxylase 3 
 ath-m.4.str   PSD3   phosphatidylserine decarboxylase 3 
 ath-m.4.tis   PSD3   phosphatidylserine decarboxylase 3 
 ath-u.5   PSD2   phosphatidylserine decarboxylase 2 
 gma-u.5   100794517   phosphatidylserine decarboxylase proenzyme 2 
 vvi-u.5   100246885   phosphatidylserine decarboxylase proenzyme 2 
 ppo-u.5   18094730   phosphatidylserine decarboxylase proenzyme 3 
 ppo-u.5   7478365   phosphatidylserine decarboxylase proenzyme 2 
 mtr-u.5   11420633   phosphatidylserine decarboxylase proenzyme 2 
 sly-u.5   101266981   phosphatidylserine decarboxylase proenzyme 2 
 osa-u.5   4325237   phosphatidylserine decarboxylase proenzyme 2-like 
 zma-u.5   100275554   uncharacterized LOC100275554 

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Top 50 coexpressed genes to PSD3 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to PSD3 (ath-m.4.lig coexpression data)

CoexMap"828703"


athPSD3 | Entrez gene ID : 828703      
Species ath gma vvi ppo mtr sly osa zma nta bna tae bdi sot bra sbi hvu cit cre ghi
Paralog 10 1 1 2 1 1 1 1 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath00564 [list] [network] Glycerophospholipid metabolism (99 genes)
GO BP
GO:0006646 [list] [network] phosphatidylethanolamine biosynthetic process  (2 genes)  IEA  
GO:0008654 [list] [network] phospholipid biosynthetic process  (71 genes)  IEA  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  IDA  
GO:0005829 [list] [network] cytosol  (2593 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0004609 [list] [network] phosphatidylserine decarboxylase activity  (3 genes)  IDA IEA IGI  
GO:0005509 [list] [network] calcium ion binding  (158 genes)  IEA  
Protein NP_567736.3 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 2,  vacu 2,  E.R. 1  (predict for NP_567736.3)
Subcellular
localization
TargetP
chlo 8  (predict for NP_567736.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
PSD3

.
ath-u.5
for
PSD3

.
ath-r.7
for
PSD3

.
ath-m.9
for
PSD3

.
ath-e.2
for
PSD3

.
ath-m.4.bio
for
PSD3

.
ath-m.4.hor
for
PSD3

.
ath-m.4.str
for
PSD3

.
ath-m.4.tis
for
PSD3

.
ath-u.5
for
PSD2

.
gma-u.5
for
100794517

.
vvi-u.5
for
100246885

.
ppo-u.5
for
18094730

.
ppo-u.5
for
7478365

.
mtr-u.5
for
11420633

.
sly-u.5
for
101266981

.
osa-u.5
for
4325237

.
zma-u.5
for
100275554

.


Ortholog ID: 6943
Species ath ath gma sly osa zma bra bra vvi ppo ppo mtr tae tae hvu ghi ghi bna sbi sot cit bdi nta nta
Symbol PSD3 PSD2 LOC100794517 LOC101266981 LOC4325237 LOC100275554 LOC103863759 LOC103846141 LOC100246885 LOC7478365 LOC18094730 LOC11420633 LOC123080807 LOC123072621 LOC123445581 LOC107929224 LOC107929560 LOC106444605 LOC8077390 LOC102591241 LOC102627056 LOC100829794 LOC107786650 LOC107761389
Function* phosphatidylserine decarboxylase 3 phosphatidylserine decarboxylase 2 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2-like uncharacterized LOC100275554 phosphatidylserine decarboxylase proenzyme 3 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 3 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 3 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 3 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2-like phosphatidylserine decarboxylase proenzyme 2-like phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2 phosphatidylserine decarboxylase proenzyme 2
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04016 MAPK signaling pathway - plant 3
ath00500 Starch and sucrose metabolism 3
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00564 Glycerophospholipid metabolism 3
sly00511 Other glycan degradation 2
sly04075 Plant hormone signal transduction 2
sly04626 Plant-pathogen interaction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00564 Glycerophospholipid metabolism 2
osa01200 Carbon metabolism 2
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00053 Ascorbate and aldarate metabolism 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 3
vvi00280 Valine, leucine and isoleucine degradation 2
vvi00410 beta-Alanine metabolism 2
vvi00640 Propanoate metabolism 2
vvi01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00073 Cutin, suberine and wax biosynthesis 2
ppo04382 Cornified envelope formation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 4
tae00564 Glycerophospholipid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04626 Plant-pathogen interaction 7
tae00564 Glycerophospholipid metabolism 3
tae04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna04382 Cornified envelope formation 3
bna00260 Glycine, serine and threonine metabolism 3
bna00350 Tyrosine metabolism 3
bna00360 Phenylalanine metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00562 Inositol phosphate metabolism 2
sbi04075 Plant hormone signal transduction 2
sbi04626 Plant-pathogen interaction 2
sbi00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00564 Glycerophospholipid metabolism 2
sot03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta00564 Glycerophospholipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03410 Base excision repair 2
nta00564 Glycerophospholipid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 828703 835825 100794517 101266981 4325237 100275554 103863759 103846141 100246885 7478365 18094730 11420633 123080807 123072621 123445581 107929224 107929560 106444605 8077390 102591241 102627056 100829794 107786650 107761389
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