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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT5G46150   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 ath-u.5   AT5G46150   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 ath-r.7   AT5G46150   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 ath-m.9   AT5G46150   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 ath-e.2   AT5G46150   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 ath-m.4.bio   AT5G46150   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 ath-m.4.hor   AT5G46150   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 ath-m.4.str   AT5G46150   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 ath-m.4.tis   AT5G46150   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 ath-u.5   ALIS1   ALA-interacting subunit 1 
 ath-u.5   AT1G54320   LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein 
 bra-r.6   103839628   putative ALA-interacting subunit 2 
 bra-r.6   103859463   ALA-interacting subunit 1 
 bra-r.6   103832529   ALA-interacting subunit 3 
 bna-r.1   111199657   ALA-interacting subunit 3 
 bna-r.1   106402504   ALA-interacting subunit 5 
 bna-r.1   106401777   ALA-interacting subunit 1-like 
 ghi-r.1   121218672   putative ALA-interacting subunit 2 
 ghi-r.1   107904367   ALA-interacting subunit 3 
 ghi-r.1   107914571   putative ALA-interacting subunit 2 
 cit-r.1   102628151   ALA-interacting subunit 3-like 
 cit-r.1   102622204   putative ALA-interacting subunit 2 
 gma-u.5   100796102   ALA-interacting subunit 3-like 
 gma-u.5   100793838   ALA-interacting subunit 3 
 vvi-u.5   100242202   ALA-interacting subunit 3 
 vvi-u.5   100252226   ALA-interacting subunit 3 
 vvi-u.5   100241169   putative ALA-interacting subunit 2 
 ppo-u.5   18097568   putative ALA-interacting subunit 4 
 ppo-u.5   18106551   ALA-interacting subunit 3 
 ppo-u.5   7497057   putative ALA-interacting subunit 2 
 mtr-u.5   120577710   ALA-interacting subunit 1 
 mtr-u.5   25488360   putative ALA-interacting subunit 2 
 sly-u.5   101268594   putative ALA-interacting subunit 2 
 sly-u.5   101256591   ALA-interacting subunit 1 
 sly-u.5   101262267   ALA-interacting subunit 5 
 sot-r.1   102589308   putative ALA-interacting subunit 2 
 sot-r.1   102598366   ALA-interacting subunit 1-like 
 sot-r.1   102601398   ALA-interacting subunit 5-like 
 nta-r.1   107806554   ALA-interacting subunit 3 
 nta-r.1   107826496   ALA-interacting subunit 1 
 osa-u.5   4328458   ALA-interacting subunit 1 
 osa-u.5   4334345   putative ALA-interacting subunit 2 
 zma-u.5   100280401   uncharacterized LOC100280401 
 zma-u.5   100282354   uncharacterized LOC100282354 
 zma-u.5   100283092   cell division control protein 50 
 tae-r.2   123105970   ALA-interacting subunit 1 
 tae-r.2   123105311   putative ALA-interacting subunit 2 
 tae-r.2   123099030   ALA-interacting subunit 1 
 hvu-r.1   123452155   ALA-interacting subunit 5-like 
 hvu-r.1   123400983   ALA-interacting subunit 3-like 
 sbi-r.1   110432038   putative ALA-interacting subunit 2 
 sbi-r.1   110433437   ALA-interacting subunit 1-like 
 bdi-r.1   100821898   ALA-interacting subunit 1 
 bdi-r.1   100833584   ALA-interacting subunit 1 
 cre-r.1   CHLRE_06g278300v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G46150 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G46150 (ath-m.4.lig coexpression data)

CoexMap"834657"


athAT5G46150 | Entrez gene ID : 834657      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 2 3 3 2 3 3 2 2 3 3 2 2 2 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04148 [list] [network] Efferocytosis (53 genes)
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
Protein NP_001330145.1 [sequence] [blastp]
NP_001330146.1 [sequence] [blastp]
NP_568657.1 [sequence] [blastp]
NP_851139.1 [sequence] [blastp]
Subcellular
localization
wolf
plas 4,  golg 2,  nucl 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for NP_001330145.1)
cyto 7,  nucl 1,  chlo 1,  extr 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_001330146.1)
plas 3,  E.R. 2,  golg 2,  nucl_plas 2  (predict for NP_568657.1)
plas 3,  E.R. 2,  golg 2,  nucl_plas 2  (predict for NP_851139.1)
Subcellular
localization
TargetP
other 7  (predict for NP_001330145.1)
other 7  (predict for NP_001330146.1)
other 7  (predict for NP_568657.1)
other 7  (predict for NP_851139.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT5G46150
ath-u.5
for
AT5G46150
ath-r.7
for
AT5G46150
ath-m.9
for
AT5G46150
ath-e.2
for
AT5G46150
ath-m.4.bio
for
AT5G46150
ath-m.4.hor
for
AT5G46150
ath-m.4.str
for
AT5G46150
ath-m.4.tis
for
AT5G46150
ath-u.5
for
ALIS1
ath-u.5
for
AT1G54320
bra-r.6
for
103839628
bra-r.6
for
103859463
bra-r.6
for
103832529
bna-r.1
for
111199657
bna-r.1
for
106402504
bna-r.1
for
106401777
ghi-r.1
for
121218672
ghi-r.1
for
107904367
ghi-r.1
for
107914571
cit-r.1
for
102628151
cit-r.1
for
102622204
gma-u.5
for
100796102
gma-u.5
for
100793838
vvi-u.5
for
100242202
vvi-u.5
for
100252226
vvi-u.5
for
100241169
ppo-u.5
for
18097568
ppo-u.5
for
18106551
ppo-u.5
for
7497057
mtr-u.5
for
120577710
mtr-u.5
for
25488360
sly-u.5
for
101268594
sly-u.5
for
101256591
sly-u.5
for
101262267
sot-r.1
for
102589308
sot-r.1
for
102598366
sot-r.1
for
102601398
nta-r.1
for
107806554
nta-r.1
for
107826496
osa-u.5
for
4328458
osa-u.5
for
4334345
zma-u.5
for
100280401
zma-u.5
for
100282354
zma-u.5
for
100283092
tae-r.2
for
123105970
tae-r.2
for
123105311
tae-r.2
for
123099030
hvu-r.1
for
123452155
hvu-r.1
for
123400983
sbi-r.1
for
110432038
sbi-r.1
for
110433437
bdi-r.1
for
100821898
bdi-r.1
for
100833584
cre-r.1
for
CHLRE_06g278300v5


Ortholog ID: 619
Species ath ath bra bra bra bna bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr sly sly sly sot sot sot nta nta osa osa osa zma zma zma tae tae tae hvu sbi sbi bdi bdi cre
Symbol AT5G46150 AT1G54320 LOC103859463 LOC103870230 LOC103842852 LOC106389851 LOC125578275 LOC107904367 LOC107914571 LOC107962409 LOC102628151 LOC102626176 LOC100779539 LOC100789806 LOC100806200 LOC100242202 LOC100252226 LOC100241169 LOC7497057 LOC7464559 LOC7460668 LOC120577710 LOC25486991 LOC101268594 LOC101256591 LOC101262267 LOC102589308 LOC102598366 LOC102601398 LOC107806554 LOC107826496 LOC4328458 LOC4334345 LOC4341775 LOC100193072 LOC103628328 LOC100284477 LOC123105311 LOC123093796 LOC123113256 LOC123400983 LOC110432038 LOC8077191 LOC100821898 LOC100833584 CHLRE_06g278300v5
Function* LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein ALA-interacting subunit 1 ALA-interacting subunit 1 putative ALA-interacting subunit 4 ALA-interacting subunit 1 putative ALA-interacting subunit 2 ALA-interacting subunit 3 putative ALA-interacting subunit 2 ALA-interacting subunit 1 ALA-interacting subunit 3-like ALA-interacting subunit 3-like ALA-interacting subunit 3 putative ALA-interacting subunit 2 ALA-interacting subunit 3 ALA-interacting subunit 3 ALA-interacting subunit 3 putative ALA-interacting subunit 2 putative ALA-interacting subunit 2 ALA-interacting subunit 3 ALA-interacting subunit 1 ALA-interacting subunit 1 ALA-interacting subunit 3 putative ALA-interacting subunit 2 ALA-interacting subunit 1 ALA-interacting subunit 5 putative ALA-interacting subunit 2 ALA-interacting subunit 1-like ALA-interacting subunit 5-like ALA-interacting subunit 3 ALA-interacting subunit 1 ALA-interacting subunit 1 putative ALA-interacting subunit 2 ALA-interacting subunit 3 cell division control protein 50 ALA-interacting subunit 3 uncharacterized LOC100284477 putative ALA-interacting subunit 2 ALA-interacting subunit 1 ALA-interacting subunit 5 ALA-interacting subunit 3-like putative ALA-interacting subunit 2 ALA-interacting subunit 3 ALA-interacting subunit 1 ALA-interacting subunit 1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 4
bna03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04144 Endocytosis 9
bna03022 Basal transcription factors 2
bna03420 Nucleotide excision repair 2
bna04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi01230 Biosynthesis of amino acids 5
ghi00020 Citrate cycle (TCA cycle) 3
ghi00480 Glutathione metabolism 3
ghi01200 Carbon metabolism 3
ghi01210 2-Oxocarboxylic acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03420 Nucleotide excision repair 4
gma04141 Protein processing in endoplasmic reticulum 4
gma04517 IgSF CAM signaling 2
gma04814 Motor proteins 2
gma04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04626 Plant-pathogen interaction 3
vvi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04626 Plant-pathogen interaction 7
mtr04016 MAPK signaling pathway - plant 5
mtr04075 Plant hormone signal transduction 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04626 Plant-pathogen interaction 3
sly04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 3
sot03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04626 Plant-pathogen interaction 7
nta00062 Fatty acid elongation 2
nta04130 SNARE interactions in vesicular transport 2
nta04016 MAPK signaling pathway - plant 2
nta04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04382 Cornified envelope formation 2
osa04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00563 Glycosylphosphatidylinositol (GPI)-anchor biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03015 mRNA surveillance pathway 2
osa04382 Cornified envelope formation 2
osa04148 Efferocytosis 2
osa04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04144 Endocytosis 4
zma04148 Efferocytosis 2
zma03250 Viral life cycle - HIV-1 2
zma03272 Virion - Hepatitis viruses 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00860 Porphyrin metabolism 2
zma01240 Biosynthesis of cofactors 2
zma04148 Efferocytosis 2
zma00520 Amino sugar and nucleotide sugar metabolism 2
zma01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00330 Arginine and proline metabolism 3
tae04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04148 Efferocytosis 3
tae01240 Biosynthesis of cofactors 3
tae00750 Vitamin B6 metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00562 Inositol phosphate metabolism 2
sbi04070 Phosphatidylinositol signaling system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 3
bdi01230 Biosynthesis of amino acids 3
bdi04146 Peroxisome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04130 SNARE interactions in vesicular transport 2
cre04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 834657 841873 103859463 103870230 103842852 106389851 125578275 107904367 107914571 107962409 102628151 102626176 100779539 100789806 100806200 100242202 100252226 100241169 7497057 7464559 7460668 120577710 25486991 101268594 101256591 101262267 102589308 102598366 102601398 107806554 107826496 4328458 4334345 4341775 100193072 103628328 100284477 123105311 123093796 123113256 123400983 110432038 8077191 100821898 100833584 5720882
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