ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ghi-r.1	121218672	putative ALA-interacting subunit 2
ghi-r.1	107904367	ALA-interacting subunit 3
ghi-r.1	107914571	putative ALA-interacting subunit 2
ghi-r.1	107934628	ALA-interacting subunit 1
ath-u.5	ALIS1	ALA-interacting subunit 1
ath-u.5	AT5G46150	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein
bra-r.6	103870230	ALA-interacting subunit 1
bra-r.6	103859463	ALA-interacting subunit 1
bra-r.6	103842852	putative ALA-interacting subunit 4
bna-r.1	106353103	ALA-interacting subunit 1
bna-r.1	106353406	ALA-interacting subunit 5
bna-r.1	106367637	putative ALA-interacting subunit 2
cit-r.1	102622204	putative ALA-interacting subunit 2
cit-r.1	102628151	ALA-interacting subunit 3-like
gma-u.5	100806200	ALA-interacting subunit 3
gma-u.5	100796102	ALA-interacting subunit 3-like
gma-u.5	100793838	ALA-interacting subunit 3
vvi-u.5	100267404	ALA-interacting subunit 3
vvi-u.5	100252226	ALA-interacting subunit 3
vvi-u.5	100242202	ALA-interacting subunit 3
ppo-u.5	7464559	ALA-interacting subunit 3
ppo-u.5	7460668	ALA-interacting subunit 1
ppo-u.5	18097568	putative ALA-interacting subunit 4
mtr-u.5	120577710	ALA-interacting subunit 1
mtr-u.5	25488360	putative ALA-interacting subunit 2
sly-u.5	101256591	ALA-interacting subunit 1
sly-u.5	101262267	ALA-interacting subunit 5
sly-u.5	101268594	putative ALA-interacting subunit 2
sot-r.1	102601398	ALA-interacting subunit 5-like
sot-r.1	102589308	putative ALA-interacting subunit 2
sot-r.1	102598366	ALA-interacting subunit 1-like
nta-r.1	107776133	putative ALA-interacting subunit 2
nta-r.1	107797918	putative ALA-interacting subunit 2
osa-u.5	4334345	putative ALA-interacting subunit 2
osa-u.5	4331429	ALA-interacting subunit 5
zma-u.5	100273403	Putative ALA-interacting subunit 2
zma-u.5	100280401	uncharacterized LOC100280401
zma-u.5	100282354	uncharacterized LOC100282354
tae-r.2	123099030	ALA-interacting subunit 1
hvu-r.1	123452571	putative ALA-interacting subunit 2
hvu-r.1	123452155	ALA-interacting subunit 5-like
sbi-r.1	8061582	ALA-interacting subunit 3
bdi-r.1	100827813	putative ALA-interacting subunit 2
bdi-r.1	100833584	ALA-interacting subunit 1
bdi-r.1	100844509	ALA-interacting subunit 1
cre-r.1	CHLRE_06g278300v5	uncharacterized protein

Top 50 coexpressed genes to 121218672 (ghi-r.1 coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to 121218672 (ghi-r.1 coexpression data)

CoexMap"121218672"

[Cytoscape]

Annotation

functional annotation

KEGG

ghi04148 [list] [network] Efferocytosis (152 genes)

GO BP

GO CC

GO:0005794 [list] [network] Golgi apparatus	(1381 genes)	IEA
GO:0005783 [list] [network] endoplasmic reticulum	(1428 genes)	IEA
GO:0005886 [list] [network] plasma membrane	(2553 genes)	IEA

GO MF

Protein

XP_040952197.1 [sequence] [blastp]

Subcellular
localization
wolf

plas 5, E.R. 3, nucl_plas 3, golg_plas 3

(predict for XP_040952197.1)

Subcellular
localization
TargetP

other 8, mito 4

(predict for XP_040952197.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target	Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ghi-r.1 for 121218672	ghi-r.1 for 107904367	ghi-r.1 for 107914571	ghi-r.1 for 107934628	ath-u.5 for ALIS1	ath-u.5 for AT5G46150	bra-r.6 for 103870230	bra-r.6 for 103859463	bra-r.6 for 103842852	bna-r.1 for 106353103	bna-r.1 for 106353406	bna-r.1 for 106367637	cit-r.1 for 102622204	cit-r.1 for 102628151	gma-u.5 for 100806200	gma-u.5 for 100796102	gma-u.5 for 100793838	vvi-u.5 for 100267404	vvi-u.5 for 100252226	vvi-u.5 for 100242202	ppo-u.5 for 7464559	ppo-u.5 for 7460668	ppo-u.5 for 18097568	mtr-u.5 for 120577710	mtr-u.5 for 25488360	sly-u.5 for 101256591	sly-u.5 for 101262267	sly-u.5 for 101268594	sot-r.1 for 102601398	sot-r.1 for 102589308	sot-r.1 for 102598366	nta-r.1 for 107776133	nta-r.1 for 107797918	osa-u.5 for 4334345	osa-u.5 for 4331429	zma-u.5 for 100273403	zma-u.5 for 100280401	zma-u.5 for 100282354	tae-r.2 for 123099030	hvu-r.1 for 123452571	hvu-r.1 for 123452155	sbi-r.1 for 8061582	bdi-r.1 for 100827813	bdi-r.1 for 100833584	bdi-r.1 for 100844509	cre-r.1 for CHLRE_06g278300v5

Ortholog

Ortholog ID: 619

Species

ghi

ath

bra

bna

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

Function^*

ALA-interacting subunit 3