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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   AT5G50110   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-u.5   AT5G50110   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-r.7   AT5G50110   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.9   AT5G50110   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-e.2   AT5G50110   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.bio   AT5G50110   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.hor   AT5G50110   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.str   AT5G50110   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 ath-m.4.tis   AT5G50110   S-adenosyl-L-methionine-dependent methyltransferases superfamily protein 
 bra-r.6   103858433   ribosomal RNA small subunit methyltransferase G 
 ghi-r.1   107904235   ribosomal RNA small subunit methyltransferase G 
 ghi-r.1   107938066   ribosomal RNA small subunit methyltransferase G 
 cit-r.1   102614338   uncharacterized LOC102614338 
 gma-u.5   100818428   ribosomal RNA small subunit methyltransferase G 
 vvi-u.5   100262143   uncharacterized LOC100262143 
 mtr-u.5   11412051   ribosomal RNA small subunit methyltransferase G 
 sly-u.5   101258352   uncharacterized LOC101258352 
 sot-r.1   102582173   ribosomal RNA small subunit methyltransferase G 
 nta-r.1   107819640   uncharacterized LOC107819640 
 nta-r.1   107793570   uncharacterized LOC107793570 
 osa-u.5   112936043   uncharacterized LOC112936043 
 zma-u.5   100277897   uncharacterized LOC100277897 
 tae-r.2   123157483   ribosomal RNA small subunit methyltransferase G 
 tae-r.2   123165028   ribosomal RNA small subunit methyltransferase G 
 hvu-r.1   123413263   ribosomal RNA small subunit methyltransferase G 
 sbi-r.1   8065703   ribosomal RNA small subunit methyltransferase G 
 bdi-r.1   100824367   ribosomal RNA small subunit methyltransferase G 
 cre-r.1   CHLRE_09g394584v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G50110 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G50110 (ath-m.4.lig coexpression data)

CoexMap"835075"


athAT5G50110 | Entrez gene ID : 835075      
Species ath bra ghi cit gma vvi mtr sly sot nta osa zma tae hvu sbi bdi cre bna ppo
Paralog 9 1 2 1 1 1 1 1 1 2 1 1 2 1 1 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0008649 [list] [network] rRNA methyltransferase activity  (12 genes)  IEA  
Protein NP_001332502.1 [sequence] [blastp]
NP_568720.4 [sequence] [blastp]
Subcellular
localization
wolf
cyto 9  (predict for NP_001332502.1)
chlo 6,  chlo_mito 5,  mito 3,  cyto_mito 1  (predict for NP_568720.4)
Subcellular
localization
TargetP
other 9  (predict for NP_001332502.1)
chlo 3,  other 3  (predict for NP_568720.4)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
AT5G50110
ath-u.5
for
AT5G50110
ath-r.7
for
AT5G50110
ath-m.9
for
AT5G50110
ath-e.2
for
AT5G50110
ath-m.4.bio
for
AT5G50110
ath-m.4.hor
for
AT5G50110
ath-m.4.str
for
AT5G50110
ath-m.4.tis
for
AT5G50110
bra-r.6
for
103858433
ghi-r.1
for
107904235
ghi-r.1
for
107938066
cit-r.1
for
102614338
gma-u.5
for
100818428
vvi-u.5
for
100262143
mtr-u.5
for
11412051
sly-u.5
for
101258352
sot-r.1
for
102582173
nta-r.1
for
107819640
nta-r.1
for
107793570
osa-u.5
for
112936043
zma-u.5
for
100277897
tae-r.2
for
123157483
tae-r.2
for
123165028
hvu-r.1
for
123413263
sbi-r.1
for
8065703
bdi-r.1
for
100824367
cre-r.1
for
CHLRE_09g394584v5


Ortholog ID: 11443
Species ath bra ghi ghi cit gma vvi mtr sly sot nta nta osa zma tae tae hvu sbi bdi cre
Symbol AT5G50110 LOC103858433 LOC107904235 LOC107938066 LOC102614338 LOC100818428 LOC100262143 LOC11412051 LOC101258352 LOC102582173 LOC107819640 LOC107793570 LOC112936043 LOC100277897 LOC123157483 LOC123165028 LOC123413263 LOC8065703 LOC100824367 CHLRE_09g394584v5
Function* S-adenosyl-L-methionine-dependent methyltransferases superfamily protein ribosomal RNA small subunit methyltransferase G ribosomal RNA small subunit methyltransferase G ribosomal RNA small subunit methyltransferase G uncharacterized LOC102614338 ribosomal RNA small subunit methyltransferase G uncharacterized LOC100262143 ribosomal RNA small subunit methyltransferase G uncharacterized LOC101258352 ribosomal RNA small subunit methyltransferase G uncharacterized LOC107819640 uncharacterized LOC107793570 uncharacterized LOC112936043 uncharacterized LOC100277897 ribosomal RNA small subunit methyltransferase G ribosomal RNA small subunit methyltransferase G ribosomal RNA small subunit methyltransferase G ribosomal RNA small subunit methyltransferase G ribosomal RNA small subunit methyltransferase G uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00960 Tropane, piperidine and pyridine alkaloid biosynthesis 3
ghi00860 Porphyrin metabolism 2
ghi00240 Pyrimidine metabolism 2
ghi01240 Biosynthesis of cofactors 2
ghi00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00240 Pyrimidine metabolism 2
gma01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03060 Protein export 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
tae00500 Starch and sucrose metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00500 Starch and sucrose metabolism 3
tae03018 RNA degradation 3
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 7
hvu03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835075 103858433 107904235 107938066 102614338 100818428 100262143 11412051 101258352 102582173 107819640 107793570 112936043 100277897 123157483 123165028 123413263 8065703 100824367 5720298
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