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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   VAD1   GRAM domain family protein 
 ath-u.5   VAD1   GRAM domain family protein 
 ath-r.7   VAD1   GRAM domain family protein 
 ath-m.9   VAD1   GRAM domain family protein 
 ath-e.2   VAD1   GRAM domain family protein 
 ath-m.4.bio   VAD1   GRAM domain family protein 
 ath-m.4.hor   VAD1   GRAM domain family protein 
 ath-m.4.str   VAD1   GRAM domain family protein 
 ath-m.4.tis   VAD1   GRAM domain family protein 
 bra-r.6   103844693   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 bna-r.1   106401166   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic-like 
 bna-r.1   106370828   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 ghi-r.1   107945563   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 ghi-r.1   107929676   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 ghi-r.1   107900809   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 cit-r.1   102625753   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 gma-u.5   VAD1   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 gma-u.5   100805910   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 vvi-u.5   100254750   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 ppo-u.5   18105064   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 ppo-u.5   7483798   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 mtr-u.5   25500049   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 sly-u.5   101257108   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 sot-r.1   102599914   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 nta-r.1   107775074   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 nta-r.1   107786250   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic-like 
 osa-u.5   4343272   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 zma-u.5   100383371   Protein VASCULAR ASSOCIATED DEATH 1 chloroplastic 
 zma-u.5   100274705   Protein VASCULAR ASSOCIATED DEATH 1 chloroplastic 
 zma-u.5   103626197   vegetative cell wall protein gp1-like 
 tae-r.2   123052659   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 tae-r.2   123044765   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 tae-r.2   123188524   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 hvu-r.1   123426019   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 sbi-r.1   8077456   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 bdi-r.1   100825873   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 cre-r.1   CHLRE_16g664050v5   uncharacterized protein 

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Top 50 coexpressed genes to VAD1 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to VAD1 (ath-m.4.lig coexpression data)

CoexMap"839232"


athVAD1 | Entrez gene ID : 839232      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 3 1 2 1 2 1 1 1 2 1 3 3 1 1 1 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043069 [list] [network] negative regulation of programmed cell death  (31 genes)  IMP  
GO:0009723 [list] [network] response to ethylene  (170 genes)  IMP  
GO:0009751 [list] [network] response to salicylic acid  (179 genes)  IMP  
GO:0042742 [list] [network] defense response to bacterium  (363 genes)  IMP  
GO CC
GO:0005783 [list] [network] endoplasmic reticulum  (897 genes)  HDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001321165.1 [sequence] [blastp]
NP_001321166.1 [sequence] [blastp]
NP_171714.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 6,  cysk 1,  chlo 1,  cyto 1,  plas 1,  cyto_plas 1  (predict for NP_001321165.1)
nucl 7,  cysk 1,  chlo 1,  cyto 1,  cysk_plas 1  (predict for NP_001321166.1)
nucl 5,  chlo 1,  vacu 1,  E.R. 1,  E.R._vacu 1  (predict for NP_171714.2)
Subcellular
localization
TargetP
chlo 8  (predict for NP_001321165.1)
chlo 8  (predict for NP_001321166.1)
chlo 8  (predict for NP_171714.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
VAD1
ath-u.5
for
VAD1
ath-r.7
for
VAD1
ath-m.9
for
VAD1
ath-e.2
for
VAD1
ath-m.4.bio
for
VAD1
ath-m.4.hor
for
VAD1
ath-m.4.str
for
VAD1
ath-m.4.tis
for
VAD1
bra-r.6
for
103844693
bna-r.1
for
106401166
bna-r.1
for
106370828
ghi-r.1
for
107945563
ghi-r.1
for
107929676
ghi-r.1
for
107900809
cit-r.1
for
102625753
gma-u.5
for
VAD1
gma-u.5
for
100805910
vvi-u.5
for
100254750
ppo-u.5
for
18105064
ppo-u.5
for
7483798
mtr-u.5
for
25500049
sly-u.5
for
101257108
sot-r.1
for
102599914
nta-r.1
for
107775074
nta-r.1
for
107786250
osa-u.5
for
4343272
zma-u.5
for
100383371
zma-u.5
for
100274705
zma-u.5
for
103626197
tae-r.2
for
123052659
tae-r.2
for
123044765
tae-r.2
for
123188524
hvu-r.1
for
123426019
sbi-r.1
for
8077456
bdi-r.1
for
100825873
cre-r.1
for
CHLRE_16g664050v5


Ortholog ID: 8258
Species ath bra bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr sly sot nta nta osa zma zma zma tae tae tae hvu sbi bdi cre
Symbol VAD1 LOC103844693 LOC106401166 LOC106370828 LOC107945563 LOC107929676 LOC107900809 LOC102625753 VAD1 LOC100805910 LOC100254750 LOC18105064 LOC7483798 LOC25500049 LOC101257108 LOC102599914 LOC107775074 LOC107786250 LOC4343272 LOC100383371 LOC100274705 LOC103626197 LOC123052659 LOC123044765 LOC123188524 LOC123426019 LOC8077456 LOC100825873 CHLRE_16g664050v5
Function* GRAM domain family protein protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic-like protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic-like protein VASCULAR ASSOCIATED DEATH 1, chloroplastic Protein VASCULAR ASSOCIATED DEATH 1 chloroplastic Protein VASCULAR ASSOCIATED DEATH 1 chloroplastic vegetative cell wall protein gp1-like protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
bna04145 Phagosome 2
bna04148 Efferocytosis 2
bna04517 IgSF CAM signaling 2
bna04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00531 Glycosaminoglycan degradation 2
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839232 103844693 106401166 106370828 107945563 107929676 107900809 102625753 100819859 100805910 100254750 18105064 7483798 25500049 101257108 102599914 107775074 107786250 4343272 100383371 100274705 103626197 123052659 123044765 123188524 123426019 8077456 100825873 5727000
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