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Orthologous genes in OrthoFinder**

Species Gene Description
 vvi-u.5   100254750   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 vvi-r.5   100254750   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 vvi-m.5   100254750   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 ath-u.5   VAD1   GRAM domain family protein 
 gma-u.5   VAD1   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 gma-u.5   100805910   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 ppo-u.5   18105064   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 ppo-u.5   7483798   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 mtr-u.5   25500049   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 sly-u.5   101257108   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 osa-u.5   4343272   protein VASCULAR ASSOCIATED DEATH 1, chloroplastic 
 zma-u.5   100383371   Protein VASCULAR ASSOCIATED DEATH 1 chloroplastic 
 zma-u.5   100274705   Protein VASCULAR ASSOCIATED DEATH 1 chloroplastic 
 zma-u.5   103626197   vegetative cell wall protein gp1-like 

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Top 50 coexpressed genes to 100254750 (vvi-u.5 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to 100254750 (vvi-u.5 coexpression data)

CoexMap"100254750"


vviLOC100254750 | Entrez gene ID : 100254750      
Species vvi ath gma ppo mtr sly osa zma bdi hvu bra cit bna sbi ghi sot nta cre tae
Paralog 3 1 2 2 1 1 1 3 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0043069 [list] [network] negative regulation of programmed cell death  (4 genes)  IEA  
GO CC
GO MF
Protein XP_002271102.1 [sequence] [blastp]
XP_010661402.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  golg 2,  cysk_nucl 2,  nucl_plas 2  (predict for XP_002271102.1)
nucl 8,  cyto 2  (predict for XP_010661402.1)
Subcellular
localization
TargetP
other 6,  chlo 6  (predict for XP_002271102.1)
other 6,  chlo 6  (predict for XP_010661402.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

vvi-u.5
for
100254750
vvi-r.5
for
100254750
vvi-m.5
for
100254750
ath-u.5
for
VAD1
gma-u.5
for
VAD1
gma-u.5
for
100805910
ppo-u.5
for
18105064
ppo-u.5
for
7483798
mtr-u.5
for
25500049
sly-u.5
for
101257108
osa-u.5
for
4343272
zma-u.5
for
100383371
zma-u.5
for
100274705
zma-u.5
for
103626197


Ortholog ID: 8258
Species vvi ath gma gma bra ppo ppo mtr ghi ghi bna bna cit sly sot nta nta osa zma zma tae tae hvu sbi bdi cre
Symbol LOC100254750 VAD1 LOC100805910 VAD1 LOC103844693 LOC7483798 LOC18105064 LOC25500049 LOC107929676 LOC107945563 LOC106370828 LOC106401166 LOC102625753 LOC101257108 LOC102599914 LOC107786250 LOC107775074 LOC4343272 LOC100274705 LOC100383371 LOC123188524 LOC123052659 LOC123426019 LOC8077456 LOC100825873 CHLRE_16g664050v5
Function* protein VASCULAR ASSOCIATED DEATH 1, chloroplastic GRAM domain family protein protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic-like protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic-like protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic Protein VASCULAR ASSOCIATED DEATH 1 chloroplastic Protein VASCULAR ASSOCIATED DEATH 1 chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic protein VASCULAR ASSOCIATED DEATH 1, chloroplastic uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04016 MAPK signaling pathway - plant 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03083 Polycomb repressive complex 2
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00230 Purine metabolism 2
ghi00740 Riboflavin metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 4
bna04145 Phagosome 2
bna04148 Efferocytosis 2
bna04517 IgSF CAM signaling 2
bna04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04626 Plant-pathogen interaction 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 2
cit03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa00531 Glycosaminoglycan degradation 2
osa04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00250 Alanine, aspartate and glutamate metabolism 3
tae00650 Butanoate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 100254750 839232 100805910 100819859 103844693 7483798 18105064 25500049 107929676 107945563 106370828 106401166 102625753 101257108 102599914 107786250 107775074 4343272 100274705 100383371 123188524 123052659 123426019 8077456 100825873 5727000
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