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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   NAF1   nuclear assembly factor 1 
 ath-u.5   NAF1   nuclear assembly factor 1 
 ath-r.7   NAF1   nuclear assembly factor 1 
 ath-m.9   NAF1   nuclear assembly factor 1 
 ath-e.2   NAF1   nuclear assembly factor 1 
 ath-m.4.bio   NAF1   nuclear assembly factor 1 
 ath-m.4.hor   NAF1   nuclear assembly factor 1 
 ath-m.4.str   NAF1   nuclear assembly factor 1 
 ath-m.4.tis   NAF1   nuclear assembly factor 1 
 bra-r.6   103844497   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 bna-r.1   106400448   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 bna-r.1   106423111   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 ghi-r.1   107920137   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 ghi-r.1   107895288   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 cit-r.1   102610849   H/ACA ribonucleoprotein complex non-core subunit NAF1-like 
 gma-u.5   102661630   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 gma-u.5   102660668   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 vvi-u.5   104880882   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 ppo-u.5   18108595   uncharacterized LOC18108595 
 ppo-u.5   7497394   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 mtr-u.5   25487609   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 mtr-u.5   25480142   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 sly-u.5   101262131   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 sot-r.1   102578573   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 nta-r.1   107821443   uncharacterized LOC107821443 
 nta-r.1   107788464   uncharacterized LOC107788464 
 nta-r.1   107803124   uncharacterized LOC107803124 
 osa-u.5   4339246   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 zma-u.5   109944563   nucleolin 
 zma-u.5   100279480   uncharacterized LOC100279480 
 tae-r.2   123061579   uncharacterized LOC123061579 
 tae-r.2   123127783   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 tae-r.2   123137457   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 hvu-r.1   123402808   H/ACA ribonucleoprotein complex non-core subunit NAF1-like 
 hvu-r.1   123443295   uncharacterized LOC123443295 
 sbi-r.1   8067476   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 bdi-r.1   100836047   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 bdi-r.1   100822327   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 cre-r.1   CHLRE_10g467100v5   uncharacterized protein 

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Top 50 coexpressed genes to NAF1 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NAF1 (ath-m.4.lig coexpression data)

CoexMap"839468"


athNAF1 | Entrez gene ID : 839468      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 1 2 2 1 2 1 2 2 1 1 3 1 2 3 2 1 2 1
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000493 [list] [network] box H/ACA snoRNP assembly  (1 genes)  IEA  
GO:0001522 [list] [network] pseudouridine synthesis  (9 genes)  IEA  
GO:0042254 [list] [network] ribosome biogenesis  (211 genes)  IEA  
GO CC
GO:0005732 [list] [network] sno(s)RNA-containing ribonucleoprotein complex  (72 genes)  IEA  
GO:0009506 [list] [network] plasmodesma  (874 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_171852.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 10  (predict for NP_171852.2)
Subcellular
localization
TargetP
other 8  (predict for NP_171852.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
NAF1
ath-u.5
for
NAF1
ath-r.7
for
NAF1
ath-m.9
for
NAF1
ath-e.2
for
NAF1
ath-m.4.bio
for
NAF1
ath-m.4.hor
for
NAF1
ath-m.4.str
for
NAF1
ath-m.4.tis
for
NAF1
bra-r.6
for
103844497
bna-r.1
for
106400448
bna-r.1
for
106423111
ghi-r.1
for
107920137
ghi-r.1
for
107895288
cit-r.1
for
102610849
gma-u.5
for
102661630
gma-u.5
for
102660668
vvi-u.5
for
104880882
ppo-u.5
for
18108595
ppo-u.5
for
7497394
mtr-u.5
for
25487609
mtr-u.5
for
25480142
sly-u.5
for
101262131
sot-r.1
for
102578573
nta-r.1
for
107821443
nta-r.1
for
107788464
nta-r.1
for
107803124
osa-u.5
for
4339246
zma-u.5
for
109944563
zma-u.5
for
100279480
tae-r.2
for
123061579
tae-r.2
for
123127783
tae-r.2
for
123137457
hvu-r.1
for
123402808
hvu-r.1
for
123443295
sbi-r.1
for
8067476
bdi-r.1
for
100836047
bdi-r.1
for
100822327
cre-r.1
for
CHLRE_10g467100v5


Ortholog ID: 6144
Species ath bra bna bna ghi ghi cit gma gma vvi ppo ppo mtr mtr sly sot nta nta nta osa zma zma tae tae tae hvu hvu sbi bdi bdi cre
Symbol NAF1 LOC103844497 LOC106400448 LOC106423111 LOC107920137 LOC107895288 LOC102610849 LOC102661630 LOC102660668 LOC104880882 LOC18108595 LOC7497394 LOC25487609 LOC25480142 LOC101262131 LOC102578573 LOC107821443 LOC107788464 LOC107766153 LOC4339246 LOC109944563 LOC100279480 LOC123061579 LOC123144814 LOC123138960 LOC123402808 LOC123443295 LOC8067476 LOC100836047 LOC100822327 CHLRE_10g467100v5
Function* nuclear assembly factor 1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 uncharacterized LOC18108595 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 uncharacterized LOC107821443 uncharacterized LOC107788464 uncharacterized LOC107766153 H/ACA ribonucleoprotein complex non-core subunit NAF1 nucleolin uncharacterized LOC100279480 uncharacterized LOC123061579 H/ACA ribonucleoprotein complex non-core subunit NAF1 uncharacterized LOC123138960 H/ACA ribonucleoprotein complex non-core subunit NAF1-like uncharacterized LOC123443295 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03082 ATP-dependent chromatin remodeling 2
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03018 RNA degradation 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03018 RNA degradation 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 11
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03018 RNA degradation 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 6
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839468 103844497 106400448 106423111 107920137 107895288 102610849 102661630 102660668 104880882 18108595 7497394 25487609 25480142 101262131 102578573 107821443 107788464 107766153 4339246 109944563 100279480 123061579 123144814 123138960 123402808 123443295 8067476 100836047 100822327 5724015
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