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Orthologous genes in OrthoFinder**

Species Gene Description
 cre-r.1   CHLRE_10g467100v5   uncharacterized protein 
 ath-u.5   NAF1   nuclear assembly factor 1 
 gma-u.5   102661630   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 gma-u.5   102660668   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 sly-u.5   101262131   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 osa-u.5   4339246   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 zma-u.5   109944563   nucleolin 
 zma-u.5   100279480   uncharacterized LOC100279480 
 vvi-u.5   104880882   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 ppo-u.5   7497394   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 ppo-u.5   18108595   uncharacterized LOC18108595 
 mtr-u.5   25487609   H/ACA ribonucleoprotein complex non-core subunit NAF1 
 mtr-u.5   25480142   H/ACA ribonucleoprotein complex non-core subunit NAF1 

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Top 50 coexpressed genes to CHLRE_10g467100v5 (cre-r.1 coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CHLRE_10g467100v5 (cre-r.1 coexpression data)

CoexMap"5724015"


creCHLRE_10g467100v5 | Entrez gene ID : 5724015    
Species cre ath gma sly osa zma vvi ppo mtr hvu sot tae nta bra cit ghi bna bdi sbi
Paralog 1 1 2 1 1 2 1 2 2 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0000493 [list] [network] box H/ACA snoRNP assembly  (2 genes)  IEA  
GO:0001522 [list] [network] pseudouridine synthesis  (29 genes)  IEA  
GO:0042254 [list] [network] ribosome biogenesis  (274 genes)  IEA  
GO CC
GO:0005732 [list] [network] sno(s)RNA-containing ribonucleoprotein complex  (18 genes)  IEA  
GO MF
GO:0003723 [list] [network] RNA binding  (670 genes)  IEA  
Protein XP_042920669.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  cyto 1,  plas 1,  pero 1,  cyto_pero 1,  cyto_plas 1  (predict for XP_042920669.1)
Subcellular
localization
TargetP
other 5  (predict for XP_042920669.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Reference

cre-r.1
for
CHLRE_10g467100v5

.
ath-u.5
for
NAF1

.
gma-u.5
for
102661630

.
gma-u.5
for
102660668

.
sly-u.5
for
101262131

.
osa-u.5
for
4339246

.
zma-u.5
for
109944563

.
zma-u.5
for
100279480

.
vvi-u.5
for
104880882

.
ppo-u.5
for
7497394

.
ppo-u.5
for
18108595

.
mtr-u.5
for
25487609

.
mtr-u.5
for
25480142

.


Ortholog ID: 6144
Species ath gma gma sly osa zma zma bra vvi ppo ppo mtr mtr tae tae hvu hvu ghi ghi bna bna cre sbi sot cit bdi bdi nta nta
Symbol NAF1 LOC102660668 LOC102661630 LOC101262131 LOC4339246 LOC100279480 LOC109944563 LOC103844497 LOC104880882 LOC7497394 LOC18108595 LOC25480142 LOC25487609 LOC123061579 LOC123144814 LOC123402808 LOC123443295 LOC107920137 LOC107895288 LOC106423111 LOC106400448 CHLRE_10g467100v5 LOC8067476 LOC102578573 LOC102610849 LOC100822327 LOC100836047 LOC107821443 LOC107766153
Function* nuclear assembly factor 1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 uncharacterized LOC100279480 nucleolin H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 uncharacterized LOC18108595 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 uncharacterized LOC123061579 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like uncharacterized LOC123443295 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 uncharacterized protein H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1-like H/ACA ribonucleoprotein complex non-core subunit NAF1 H/ACA ribonucleoprotein complex non-core subunit NAF1 uncharacterized LOC107821443 uncharacterized LOC107766153
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 8
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 11
sly03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03018 RNA degradation 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03083 Polycomb repressive complex 2
ghi03018 RNA degradation 2
ghi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 7
bna03082 ATP-dependent chromatin remodeling 2
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 6
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00230 Purine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 5
bdi03018 RNA degradation 2
bdi03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839468 102660668 102661630 101262131 4339246 100279480 109944563 103844497 104880882 7497394 18108595 25480142 25487609 123061579 123144814 123402808 123443295 107920137 107895288 106423111 106400448 5724015 8067476 102578573 102610849 100822327 100836047 107821443 107766153
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