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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.lig   LSM2   Small nuclear ribonucleoprotein family protein 
 ath-u.5   LSM2   Small nuclear ribonucleoprotein family protein 
 ath-r.7   LSM2   Small nuclear ribonucleoprotein family protein 
 ath-m.9   LSM2   Small nuclear ribonucleoprotein family protein 
 ath-e.2   LSM2   Small nuclear ribonucleoprotein family protein 
 ath-m.4.bio   LSM2   Small nuclear ribonucleoprotein family protein 
 ath-m.4.hor   LSM2   Small nuclear ribonucleoprotein family protein 
 ath-m.4.str   LSM2   Small nuclear ribonucleoprotein family protein 
 ath-m.4.tis   LSM2   Small nuclear ribonucleoprotein family protein 
 bra-r.6   103844517   sm-like protein LSM2 
 bra-r.6   103836620   sm-like protein LSM2 
 bna-r.1   106423004   sm-like protein LSM2 
 bna-r.1   106401226   sm-like protein LSM2 
 bna-r.1   106399418   sm-like protein LSM2 
 ghi-r.1   121204966   sm-like protein LSM2 
 ghi-r.1   107949227   sm-like protein LSM2 
 cit-r.1   102628439   sm-like protein LSM2 
 gma-u.5   102665888   sm-like protein LSM2 
 gma-u.5   100305778   Sm_like superfamily protein 
 ppo-u.5   18098278   sm-like protein LSM2 
 ppo-u.5   7480750   sm-like protein LSM2 
 mtr-u.5   11442020   sm-like protein LSM2 
 mtr-u.5   25499092   sm-like protein LSM2 
 sly-u.5   104649355   sm-like protein LSM2 
 sly-u.5   101250608   sm-like protein LSM2 
 sot-r.1   102601306   sm-like protein LSM2 
 sot-r.1   102600939   sm-like protein LSM2 
 osa-u.5   4344686   sm-like protein LSM2 
 zma-u.5   100276999   SnRNP core Sm protein Sm-X5-like protein 
 zma-u.5   100286339   snRNP core Sm protein Sm-X5-like protein 
 tae-r.2   123167833   sm-like protein LSM2 
 tae-r.2   123160113   sm-like protein LSM2 
 tae-r.2   123147364   sm-like protein LSM2 
 hvu-r.1   123411046   sm-like protein LSM2 
 sbi-r.1   110435111   sm-like protein LSM2 
 sbi-r.1   8067850   sm-like protein LSM2 
 bdi-r.1   100843890   sm-like protein LSM2 
 cre-r.1   CHLRE_10g441950v5   uncharacterized protein 

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Top 50 coexpressed genes to LSM2 (ath-m.4.lig coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to LSM2 (ath-m.4.lig coexpression data)

CoexMap"839526"


athLSM2 | Entrez gene ID : 839526      
Species ath bra bna ghi cit gma ppo mtr sly sot osa zma tae hvu sbi bdi cre vvi nta
Paralog 9 2 3 2 1 2 2 2 2 2 1 2 3 1 2 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03018 [list] [network] RNA degradation (114 genes)
ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_563682.1 [sequence] [blastp]
Subcellular
localization
wolf
cyto 4,  chlo 4,  cyto_E.R. 3,  mito 1,  extr 1  (predict for NP_563682.1)
Subcellular
localization
TargetP
other 5,  scret 4  (predict for NP_563682.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.lig
for
LSM2
ath-u.5
for
LSM2
ath-r.7
for
LSM2
ath-m.9
for
LSM2
ath-e.2
for
LSM2
ath-m.4.bio
for
LSM2
ath-m.4.hor
for
LSM2
ath-m.4.str
for
LSM2
ath-m.4.tis
for
LSM2
bra-r.6
for
103844517
bra-r.6
for
103836620
bna-r.1
for
106423004
bna-r.1
for
106401226
bna-r.1
for
106399418
ghi-r.1
for
121204966
ghi-r.1
for
107949227
cit-r.1
for
102628439
gma-u.5
for
102665888
gma-u.5
for
100305778
ppo-u.5
for
18098278
ppo-u.5
for
7480750
mtr-u.5
for
11442020
mtr-u.5
for
25499092
sly-u.5
for
104649355
sly-u.5
for
101250608
sot-r.1
for
102601306
sot-r.1
for
102600939
osa-u.5
for
4344686
zma-u.5
for
100276999
zma-u.5
for
100286339
tae-r.2
for
123167833
tae-r.2
for
123160113
tae-r.2
for
123147364
hvu-r.1
for
123411046
sbi-r.1
for
110435111
sbi-r.1
for
8067850
bdi-r.1
for
100843890
cre-r.1
for
CHLRE_10g441950v5


Ortholog ID: 7431
Species ath bra bra bna bna bna ghi ghi cit gma gma ppo ppo mtr mtr sly sly sot sot osa zma zma tae tae tae hvu sbi sbi bdi cre
Symbol LSM2 LOC103844517 LOC103836620 LOC106401226 LOC106399418 LOC106399363 LOC121204966 LOC107949227 LOC102628439 LOC102665888 LOC100305778 LOC18098278 LOC7480750 LOC11442020 LOC25499092 LOC104649355 LOC101250608 LOC102601306 LOC102600939 LOC4344686 LOC100276999 LOC100286339 LOC123167833 LOC123160113 LOC123147364 LOC123411046 LOC110435111 LOC8067850 LOC100843890 CHLRE_10g441950v5
Function* Small nuclear ribonucleoprotein family protein sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 Sm_like superfamily protein sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 SnRNP core Sm protein Sm-X5-like protein snRNP core Sm protein Sm-X5-like protein sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 sm-like protein LSM2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 7
ath03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra00190 Oxidative phosphorylation 4
bra03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 7
bra03018 RNA degradation 4
bra03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 4
bna04122 Sulfur relay system 2
bna00541 Biosynthesis of various nucleotide sugars 2
bna01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 4
bna04122 Sulfur relay system 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03018 RNA degradation 6
bna03040 Spliceosome 4
bna00541 Biosynthesis of various nucleotide sugars 2
bna01250 Biosynthesis of nucleotide sugars 2
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 5
ghi03060 Protein export 3
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03018 RNA degradation 2
ghi03040 Spliceosome 2
ghi03010 Ribosome 2
ghi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 3
gma03420 Nucleotide excision repair 3
gma03050 Proteasome 2
gma03018 RNA degradation 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 4
gma03010 Ribosome 2
gma03018 RNA degradation 2
gma04120 Ubiquitin mediated proteolysis 2
gma03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 6
ppo03010 Ribosome 3
ppo03050 Proteasome 3
ppo03018 RNA degradation 2
ppo00190 Oxidative phosphorylation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo00190 Oxidative phosphorylation 5
ppo03040 Spliceosome 3
ppo03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 4
mtr03018 RNA degradation 3
mtr03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03040 Spliceosome 4
mtr03018 RNA degradation 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03040 Spliceosome 6
sly03010 Ribosome 5
sly03018 RNA degradation 3
sly03020 RNA polymerase 2
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 7
sly03040 Spliceosome 5
sly03018 RNA degradation 3
sly03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03040 Spliceosome 5
sot03018 RNA degradation 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03050 Proteasome 5
sot00190 Oxidative phosphorylation 3
sot03040 Spliceosome 3
sot03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 5
osa03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 4
zma03040 Spliceosome 3
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 7
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 16
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 18
tae03018 RNA degradation 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 8
hvu03018 RNA degradation 2
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03018 RNA degradation 2
sbi03040 Spliceosome 2
sbi03020 RNA polymerase 2
sbi03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi01200 Carbon metabolism 3
sbi01230 Biosynthesis of amino acids 3
sbi03018 RNA degradation 2
sbi03040 Spliceosome 2
sbi00010 Glycolysis / Gluconeogenesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 5
bdi04016 MAPK signaling pathway - plant 2
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 4
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 839526 103844517 103836620 106401226 106399418 106399363 121204966 107949227 102628439 102665888 100305778 18098278 7480750 11442020 25499092 104649355 101250608 102601306 102600939 4344686 100276999 100286339 123167833 123160113 123147364 123411046 110435111 8067850 100843890 5715962
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