ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.str	SNRNP-G	Putative small nuclear ribonucleoprotein G
ath-u.5	SNRNP-G	Putative small nuclear ribonucleoprotein G
ath-r.7	SNRNP-G	Putative small nuclear ribonucleoprotein G
ath-m.9	SNRNP-G	Putative small nuclear ribonucleoprotein G
ath-e.2	SNRNP-G	Putative small nuclear ribonucleoprotein G
ath-m.4.bio	SNRNP-G	Putative small nuclear ribonucleoprotein G
ath-m.4.hor	SNRNP-G	Putative small nuclear ribonucleoprotein G
ath-m.4.lig	SNRNP-G	Putative small nuclear ribonucleoprotein G
ath-m.4.tis	SNRNP-G	Putative small nuclear ribonucleoprotein G
ath-u.5	AT3G11500	Small nuclear ribonucleoprotein family protein
bra-r.6	103864505	probable small nuclear ribonucleoprotein G
bra-r.6	103870221	probable small nuclear ribonucleoprotein G
bra-r.6	103870338	probable small nuclear ribonucleoprotein G
bna-r.1	111216092	probable small nuclear ribonucleoprotein G
bna-r.1	106452478	probable small nuclear ribonucleoprotein G
bna-r.1	106446620	probable small nuclear ribonucleoprotein G
ghi-r.1	107899248	probable small nuclear ribonucleoprotein G
ghi-r.1	107896350	probable small nuclear ribonucleoprotein G
ghi-r.1	107908690	probable small nuclear ribonucleoprotein G
cit-r.1	102617205	probable small nuclear ribonucleoprotein G
gma-u.5	100500333	probable small nuclear ribonucleoprotein G
gma-u.5	100799718	probable small nuclear ribonucleoprotein G
gma-u.5	100305530	probable small nuclear ribonucleoprotein G
vvi-u.5	100247783	probable small nuclear ribonucleoprotein G
ppo-u.5	7492248	probable small nuclear ribonucleoprotein G
ppo-u.5	7465260	probable small nuclear ribonucleoprotein G
mtr-u.5	11442022	probable small nuclear ribonucleoprotein G
mtr-u.5	25496613	probable small nuclear ribonucleoprotein G
sly-u.5	101264989	probable small nuclear ribonucleoprotein G
sly-u.5	101245652	probable small nuclear ribonucleoprotein G
sot-r.1	102582177	probable small nuclear ribonucleoprotein G
sot-r.1	102582252	probable small nuclear ribonucleoprotein G
nta-r.1	107817742	putative small nuclear ribonucleoprotein G
nta-r.1	107791889	putative small nuclear ribonucleoprotein G
nta-r.1	107769056	putative small nuclear ribonucleoprotein G
osa-u.5	4343870	probable small nuclear ribonucleoprotein G
osa-u.5	4333092	probable small nuclear ribonucleoprotein G
tae-r.2	123044242	probable small nuclear ribonucleoprotein G
tae-r.2	123187978	probable small nuclear ribonucleoprotein G
hvu-r.1	123425350	probable small nuclear ribonucleoprotein G
sbi-r.1	8060670	probable small nuclear ribonucleoprotein G
sbi-r.1	8080416	probable small nuclear ribonucleoprotein G
bdi-r.1	100831316	probable small nuclear ribonucleoprotein G
bdi-r.1	100828642	probable small nuclear ribonucleoprotein G
cre-r.1	CHLRE_13g566050v5	uncharacterized protein

Top 50 coexpressed genes to SNRNP-G (ath-m.4.str coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to SNRNP-G (ath-m.4.str coexpression data)

CoexMap"816925"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03040 [list] [network] Spliceosome (243 genes)

GO BP

GO CC

GO:0005773 [list] [network] vacuole	(984 genes)	HDA
GO:0005634 [list] [network] nucleus	(10367 genes)	ISM

GO MF

GO:0003729 [list] [network] mRNA binding	(1514 genes)	HDA
GO:0003723 [list] [network] RNA binding	(1764 genes)	IEA

Protein

NP_001318277.1 [sequence] [blastp]
NP_179971.1 [sequence] [blastp]

Subcellular
localization
wolf

cyto 9, extr 1	(predict for NP_001318277.1)
cyto 7, chlo 1, mito 1, extr 1	(predict for NP_179971.1)

Subcellular
localization
TargetP

other 6, scret 3	(predict for NP_001318277.1)
other 6	(predict for NP_179971.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for SNRNP-G	ath-u.5 for SNRNP-G	ath-r.7 for SNRNP-G	ath-m.9 for SNRNP-G	ath-e.2 for SNRNP-G	ath-m.4.bio for SNRNP-G	ath-m.4.hor for SNRNP-G	ath-m.4.lig for SNRNP-G	ath-m.4.tis for SNRNP-G	ath-u.5 for AT3G11500	bra-r.6 for 103864505	bra-r.6 for 103870221	bra-r.6 for 103870338	bna-r.1 for 111216092	bna-r.1 for 106452478	bna-r.1 for 106446620	ghi-r.1 for 107899248	ghi-r.1 for 107896350	ghi-r.1 for 107908690	cit-r.1 for 102617205	gma-u.5 for 100500333	gma-u.5 for 100799718	gma-u.5 for 100305530	vvi-u.5 for 100247783	ppo-u.5 for 7492248	ppo-u.5 for 7465260	mtr-u.5 for 11442022	mtr-u.5 for 25496613	sly-u.5 for 101264989	sly-u.5 for 101245652	sot-r.1 for 102582177	sot-r.1 for 102582252	nta-r.1 for 107817742	nta-r.1 for 107791889	nta-r.1 for 107769056	osa-u.5 for 4343870	osa-u.5 for 4333092	tae-r.2 for 123044242	tae-r.2 for 123187978	hvu-r.1 for 123425350	sbi-r.1 for 8060670	sbi-r.1 for 8080416	bdi-r.1 for 100831316	bdi-r.1 for 100828642	cre-r.1 for CHLRE_13g566050v5

Ortholog

Ortholog ID: 3553

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

tae

hvu

sbi

bdi

cre

Symbol

SNRNP-G

Function^*

Putative small nuclear ribonucleoprotein G

Small nuclear ribonucleoprotein family protein

probable small nuclear ribonucleoprotein G

putative small nuclear ribonucleoprotein G

probable small nuclear ribonucleoprotein G

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	14
ath03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	13
ath03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	7
bra03050	Proteasome	2
bra03010	Ribosome	2
bra03013	Nucleocytoplasmic transport	2
bra03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	6
bra00190	Oxidative phosphorylation	3
bra03018	RNA degradation	3
bra04145	Phagosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	8
bna03010	Ribosome	7
bna03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna03410	Base excision repair	2
bna03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03040	Spliceosome	4
bna03050	Proteasome	3
bna03410	Base excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	16
ghi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	12
ghi03040	Spliceosome	2
ghi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03040	Spliceosome	10
ghi03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	3
cit03040	Spliceosome	3
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	6
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	4
gma03040	Spliceosome	3
gma00230	Purine metabolism	2
gma00240	Pyrimidine metabolism	2
gma01232	Nucleotide metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	8
gma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi03010	Ribosome	7
vvi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03040	Spliceosome	4
ppo03018	RNA degradation	3
ppo03010	Ribosome	3
ppo03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	13
ppo04120	Ubiquitin mediated proteolysis	3
ppo04016	MAPK signaling pathway - plant	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	9
mtr03020	RNA polymerase	3
mtr03420	Nucleotide excision repair	3
mtr03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	13
mtr03020	RNA polymerase	2
mtr03420	Nucleotide excision repair	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03040	Spliceosome	6
sly03018	RNA degradation	3
sly03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	13
sly03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	8
sot03040	Spliceosome	3
sot03008	Ribosome biogenesis in eukaryotes	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03040	Spliceosome	4
sot03018	RNA degradation	3
sot03010	Ribosome	2
sot03050	Proteasome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03040	Spliceosome	11
nta03018	RNA degradation	7
nta00564	Glycerophospholipid metabolism	2
nta03020	RNA polymerase	2
nta03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	7
nta03040	Spliceosome	6
nta03018	RNA degradation	4
nta00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03010	Ribosome	9
nta04141	Protein processing in endoplasmic reticulum	2
nta03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	11
osa03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	12
osa03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	11
tae03040	Spliceosome	4
tae03018	RNA degradation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	8
tae03010	Ribosome	6
tae03018	RNA degradation	3
tae03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03040	Spliceosome	4
hvu03010	Ribosome	3
hvu03020	RNA polymerase	2
hvu03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03040	Spliceosome	6
sbi03420	Nucleotide excision repair	2
sbi03018	RNA degradation	2
sbi04120	Ubiquitin mediated proteolysis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	8
bdi03010	Ribosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	6
bdi03040	Spliceosome	3
bdi03020	RNA polymerase	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03040	Spliceosome	12
cre03013	Nucleocytoplasmic transport	2

Expression

Expression pattern

Entrez Gene ID^*

816925

820323

103864505

103870221

103870338

106446620

106435722

106422863

107896350

107908690

107925553

102617205

100500333

100799718

100305530

100247783

7492248

7465260

11442022

25496613

101264989

101245652

102582177

102582252

107817742

107791889

107769056

4343870

4333092

123044242

123187978

123425350

8060670

8080416

100831316

100828642

5719053

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Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	tae	hvu	sbi	bdi	cre	zma
Paralog	10	3	3	3	1	3	1	2	2	2	2	3	2	2	1	2	2	1	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to SNRNP-G (ath-m.4.str coexpression data)

Top 50 enrichment test to SNRNP-G (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**