ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.str	AT3G06700	Ribosomal L29e protein family
ath-u.5	AT3G06700	Ribosomal L29e protein family
ath-r.7	AT3G06700	Ribosomal L29e protein family
ath-m.9	AT3G06700	Ribosomal L29e protein family
ath-e.2	AT3G06700	Ribosomal L29e protein family
ath-m.4.bio	AT3G06700	Ribosomal L29e protein family
ath-m.4.hor	AT3G06700	Ribosomal L29e protein family
ath-m.4.lig	AT3G06700	Ribosomal L29e protein family
ath-m.4.tis	AT3G06700	Ribosomal L29e protein family
ath-u.5	AT3G06680	Ribosomal L29e protein family
bra-r.6	103859176	60S ribosomal protein L29-2
bra-r.6	103870725	60S ribosomal protein L29-1
bra-r.6	103849728	60S ribosomal protein L29-1
bna-r.1	125602529	60S ribosomal protein L29-1
bna-r.1	106400541	60S ribosomal protein L29-1
ghi-r.1	107938650	60S ribosomal protein L29-2
ghi-r.1	107926378	60S ribosomal protein L29-1
ghi-r.1	107896617	60S ribosomal protein L29-1
cit-r.1	102626567	60S ribosomal protein L29-1
cit-r.1	102624936	60S ribosomal protein L29-1
gma-u.5	100499874	60S ribosomal protein L29-1
gma-u.5	100777189	60S ribosomal protein L29-1
gma-u.5	100803210	60S ribosomal protein L29-1
ppo-u.5	7471116	60S ribosomal protein L29-1
ppo-u.5	7481396	60S ribosomal protein L29-1
ppo-u.5	7482267	60S ribosomal protein L29-1
mtr-u.5	25494114	60S ribosomal protein L29-1
mtr-u.5	11427897	60S ribosomal protein L29-1
sly-u.5	101263912	large ribosomal subunit protein eL29y-like
sly-u.5	DDTFR19	ripening regulated protein DDTFR19
sot-r.1	102582754	60S ribosomal protein L29-2
sot-r.1	102581332	60S ribosomal protein L29-2-like
osa-u.5	4323904	large ribosomal subunit protein eL29z
osa-u.5	4338517	large ribosomal subunit protein eL29z
zma-u.5	100281939	60S ribosomal protein L29-like
zma-u.5	100281996	60S ribosomal protein L29-like
zma-u.5	100285060	60S ribosomal protein L29-like
tae-r.2	123129241	60S ribosomal protein L29-1
tae-r.2	123181738	60S ribosomal protein L29-1
tae-r.2	123052873	60S ribosomal protein L29-1
hvu-r.1	123440896	60S ribosomal protein L29-1-like
sbi-r.1	8061891	60S ribosomal protein L29-1
sbi-r.1	8083759	60S ribosomal protein L29-2
bdi-r.1	100846456	60S ribosomal protein L29-1
bdi-r.1	100838587	60S ribosomal protein L29-1
cre-r.1	CHLRE_03g207050v5	ribosomal protein L29

Top 50 coexpressed genes to AT3G06700 (ath-m.4.str coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT3G06700 (ath-m.4.str coexpression data)

CoexMap"819855"

[Cytoscape]

Annotation

functional annotation

KEGG

ath03010 [list] [network] Ribosome (394 genes)

GO BP

GO:0006412 [list] [network] translation

(926 genes)

IEA

GO CC

GO:0022625 [list] [network] cytosolic large ribosomal subunit	(124 genes)	HDA
GO:0005730 [list] [network] nucleolus	(394 genes)	HDA
GO:0005737 [list] [network] cytoplasm	(14000 genes)	ISM

GO MF

Protein

NP_001030650.1 [sequence] [blastp]
NP_001030651.1 [sequence] [blastp]
NP_187326.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 7, chlo 1, cyto 1, mito 1, extr 1, chlo_mito 1	(predict for NP_001030650.1)
nucl 7, chlo 1, cyto 1, mito 1, extr 1, chlo_mito 1	(predict for NP_001030651.1)
nucl 7, chlo 1, cyto 1, mito 1, extr 1, chlo_mito 1	(predict for NP_187326.1)

Subcellular
localization
TargetP

chlo 7	(predict for NP_001030650.1)
chlo 7	(predict for NP_001030651.1)
chlo 7	(predict for NP_187326.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for AT3G06700	ath-u.5 for AT3G06700	ath-r.7 for AT3G06700	ath-m.9 for AT3G06700	ath-e.2 for AT3G06700	ath-m.4.bio for AT3G06700	ath-m.4.hor for AT3G06700	ath-m.4.lig for AT3G06700	ath-m.4.tis for AT3G06700	ath-u.5 for AT3G06680	bra-r.6 for 103859176	bra-r.6 for 103870725	bra-r.6 for 103849728	bna-r.1 for 125602529	bna-r.1 for 106400541	ghi-r.1 for 107938650	ghi-r.1 for 107926378	ghi-r.1 for 107896617	cit-r.1 for 102626567	cit-r.1 for 102624936	gma-u.5 for 100499874	gma-u.5 for 100777189	gma-u.5 for 100803210	ppo-u.5 for 7471116	ppo-u.5 for 7481396	ppo-u.5 for 7482267	mtr-u.5 for 25494114	mtr-u.5 for 11427897	sly-u.5 for 101263912	sly-u.5 for DDTFR19	sot-r.1 for 102582754	sot-r.1 for 102581332	osa-u.5 for 4323904	osa-u.5 for 4338517	zma-u.5 for 100281939	zma-u.5 for 100281996	zma-u.5 for 100285060	tae-r.2 for 123129241	tae-r.2 for 123181738	tae-r.2 for 123052873	hvu-r.1 for 123440896	sbi-r.1 for 8061891	sbi-r.1 for 8083759	bdi-r.1 for 100846456	bdi-r.1 for 100838587	cre-r.1 for CHLRE_03g207050v5

Ortholog

Ortholog ID: 3680

Species

ath

bra

bna

ghi

cit

gma

ppo

mtr

sly

sot

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

DDTFR19

Function^*

Ribosomal L29e protein family

60S ribosomal protein L29-2

60S ribosomal protein L29-1

60S ribosomal protein L29-2

60S ribosomal protein L29-1

large ribosomal subunit protein eL29y-like

ripening regulated protein DDTFR19

60S ribosomal protein L29-2

60S ribosomal protein L29-2-like

large ribosomal subunit protein eL29z

60S ribosomal protein L29-like

60S ribosomal protein L29-1

60S ribosomal protein L29-1-like

60S ribosomal protein L29-1

60S ribosomal protein L29-2

60S ribosomal protein L29-1

ribosomal protein L29

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	16

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	17

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	9
ghi03020	RNA polymerase	2
ghi03420	Nucleotide excision repair	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	12

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03010	Ribosome	11
gma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly03010	Ribosome	14

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	19

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	20

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
osa03010	Ribosome	21

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	17
zma03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	11
zma03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	10

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03010	Ribosome	18

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	14
sbi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	13

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03010	Ribosome	15

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre03010	Ribosome	19

Expression

Expression pattern

Entrez Gene ID^*

819855

819853

103859176

103870725

103849728

106400541

106346115

107938650

107896617

121222450

102626567

102624936

100499874

100803210

100810108

7471116

7481396

7482267

25494114

11427897

101263912

544172

102582754

102581332

4323904

4338517

100281939

100281996

100285060

123129241

123181738

123052873

123440896

8061891

8083759

100846456

100838587

5718833

The preparation time of this page was 0.4 [sec].


Species	ath	bra	bna	ghi	cit	gma	ppo	mtr	sly	sot	osa	zma	tae	hvu	sbi	bdi	cre	vvi	nta
Paralog	10	3	2	3	2	3	3	2	2	2	2	3	3	1	2	2	1	0	0

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT3G06700 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT3G06700 (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**