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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   WLIM2b   GATA type zinc finger transcription factor family protein 
 ath-u.5   WLIM2b   GATA type zinc finger transcription factor family protein 
 ath-r.7   WLIM2b   GATA type zinc finger transcription factor family protein 
 ath-m.9   WLIM2b   GATA type zinc finger transcription factor family protein 
 ath-e.2   WLIM2b   GATA type zinc finger transcription factor family protein 
 ath-m.4.bio   WLIM2b   GATA type zinc finger transcription factor family protein 
 ath-m.4.hor   WLIM2b   GATA type zinc finger transcription factor family protein 
 ath-m.4.lig   WLIM2b   GATA type zinc finger transcription factor family protein 
 ath-m.4.tis   WLIM2b   GATA type zinc finger transcription factor family protein 
 ath-u.5   WLIM2a   GATA type zinc finger transcription factor family protein 
 bra-r.6   103867000   LIM domain-containing protein WLIM2a 
 bna-r.1   106450815   LIM domain-containing protein WLIM2a 
 ghi-r.1   107919796   LIM domain-containing protein WLIM2b 
 ghi-r.1   107911968   LIM domain-containing protein PLIM2c-like 
 cit-r.1   102620386   LIM domain-containing protein WLIM2b 
 gma-u.5   100809605   LIM domain-containing protein WLIM2b 
 gma-u.5   100809121   LIM domain-containing protein WLIM2b-like 
 gma-u.5   100305845   uncharacterized LOC100305845 
 vvi-u.5   100263273   LIM domain-containing protein WLIM2b 
 ppo-u.5   7488001   LIM domain-containing protein WLIM2b 
 ppo-u.5   7464920   LIM domain-containing protein PLIM2b 
 ppo-u.5   7461757   LIM domain-containing protein PLIM2b 
 mtr-u.5   11410341   LIM domain-containing protein WLIM2b 
 sly-u.5   101253787   LIM domain-containing protein WLIM2b 
 sly-u.5   PLIM2a   LIM domain-containing protein PLIM2a 
 sot-r.1   102588712   LIM domain-containing protein WLIM2b-like 
 nta-r.1   107819250   LIM domain-containing protein WLIM2b 
 nta-r.1   107818347   LIM domain-containing protein WLIM2b 
 osa-u.5   4332355   LIM domain-containing protein WLIM2a 
 osa-u.5   4330114   LIM domain-containing protein PLIM2b-like 
 zma-u.5   100272616   uncharacterized LOC100272616 
 zma-u.5   118475780   LIM domain-containing protein PLIM2b-like 
 zma-u.5   100194335   uncharacterized LOC100194335 
 tae-r.2   123097959   LIM domain-containing protein WLIM2a 
 tae-r.2   123041649   LIM domain-containing protein PLIM2b 
 tae-r.2   123092651   LIM domain-containing protein WLIM2a 
 hvu-r.1   123433390   LIM domain-containing protein PLIM2b-like 
 hvu-r.1   123449066   LIM domain-containing protein WLIM2a-like 
 sbi-r.1   8054287   LIM domain-containing protein WLIM2a 
 bdi-r.1   100843483   LIM domain-containing protein PLIM2b 
 bdi-r.1   100844609   LIM domain-containing protein WLIM2a 

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Top 50 coexpressed genes to WLIM2b (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to WLIM2b (ath-m.4.str coexpression data)

CoexMap"824743"


athWLIM2b | Entrez gene ID : 824743      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 1 1 2 1 3 1 3 1 2 1 2 2 3 3 2 1 2 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0051017 [list] [network] actin filament bundle assembly  (20 genes)  IDA  
GO CC
GO:0015629 [list] [network] actin cytoskeleton  (37 genes)  IDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
GO:0051015 [list] [network] actin filament binding  (34 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA  
Protein NP_001030868.1 [sequence] [blastp]
NP_001030870.1 [sequence] [blastp]
NP_001190099.1 [sequence] [blastp]
NP_001319760.1 [sequence] [blastp]
NP_001319761.1 [sequence] [blastp]
NP_191136.1 [sequence] [blastp]
NP_680133.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  nucl 4,  mito 1  (predict for NP_001030868.1)
chlo 4,  nucl 4,  mito 1  (predict for NP_001030870.1)
nucl 6,  mito 2,  chlo 1  (predict for NP_001190099.1)
nucl 6,  chlo 2,  mito 1,  plas 1,  mito_plas 1  (predict for NP_001319760.1)
nucl 4,  chlo 4,  mito 1,  plas 1,  extr 1,  mito_plas 1  (predict for NP_001319761.1)
chlo 4,  nucl 4,  mito 1  (predict for NP_191136.1)
chlo 4,  nucl 4,  mito 1  (predict for NP_680133.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001030868.1)
other 8  (predict for NP_001030870.1)
other 8  (predict for NP_001190099.1)
other 8  (predict for NP_001319760.1)
other 8  (predict for NP_001319761.1)
other 8  (predict for NP_191136.1)
other 8  (predict for NP_680133.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
WLIM2b
ath-u.5
for
WLIM2b
ath-r.7
for
WLIM2b
ath-m.9
for
WLIM2b
ath-e.2
for
WLIM2b
ath-m.4.bio
for
WLIM2b
ath-m.4.hor
for
WLIM2b
ath-m.4.lig
for
WLIM2b
ath-m.4.tis
for
WLIM2b
ath-u.5
for
WLIM2a
bra-r.6
for
103867000
bna-r.1
for
106450815
ghi-r.1
for
107919796
ghi-r.1
for
107911968
cit-r.1
for
102620386
gma-u.5
for
100809605
gma-u.5
for
100809121
gma-u.5
for
100305845
vvi-u.5
for
100263273
ppo-u.5
for
7488001
ppo-u.5
for
7464920
ppo-u.5
for
7461757
mtr-u.5
for
11410341
sly-u.5
for
101253787
sly-u.5
for
PLIM2a
sot-r.1
for
102588712
nta-r.1
for
107819250
nta-r.1
for
107818347
osa-u.5
for
4332355
osa-u.5
for
4330114
zma-u.5
for
100272616
zma-u.5
for
118475780
zma-u.5
for
100194335
tae-r.2
for
123097959
tae-r.2
for
123041649
tae-r.2
for
123092651
hvu-r.1
for
123433390
hvu-r.1
for
123449066
sbi-r.1
for
8054287
bdi-r.1
for
100843483
bdi-r.1
for
100844609


Ortholog ID: 678
Species ath ath ath bna bna ghi ghi ghi cit gma gma gma vvi ppo ppo mtr sly sly sly sot nta nta osa osa zma zma zma tae tae tae hvu sbi bdi bdi
Symbol WLIM2b WLIM2a PLIM2b LOC106370058 LOC106356507 LOC107911968 LOC107900453 LOC107961181 LOC102620386 LOC100809605 LOC100807765 LOC100788569 LOC100263273 LOC7488001 LOC7458092 LOC11410341 LOC101253787 PLIM2a LOC101251934 LOC102588712 LOC107796302 LOC107759653 LOC4332355 LOC4349048 LOC118475780 LOC100194335 LOC100381874 LOC123123253 LOC123134277 LOC123185718 LOC123433390 LOC8054287 LOC100843483 LOC100844609
Function* GATA type zinc finger transcription factor family protein GATA type zinc finger transcription factor family protein GATA type zinc finger transcription factor family protein LIM domain-containing protein PLIM2b LIM domain-containing protein PLIM2b-like LIM domain-containing protein PLIM2c-like LIM domain-containing protein WLIM2b LIM domain-containing protein PLIM2c LIM domain-containing protein WLIM2b LIM domain-containing protein WLIM2b LIM domain-containing protein WLIM2b LIM domain-containing protein PLIM2c LIM domain-containing protein WLIM2b LIM domain-containing protein WLIM2b LIM domain-containing protein WLIM2b LIM domain-containing protein WLIM2b LIM domain-containing protein WLIM2b LIM domain-containing protein PLIM2a LIM domain-containing protein PLIM2b-like LIM domain-containing protein WLIM2b-like LIM domain-containing protein PLIM2b-like LIM domain-containing protein WLIM2b LIM domain-containing protein WLIM2a LIM domain-containing protein PLIM2b-like LIM domain-containing protein PLIM2b-like uncharacterized LOC100194335 uncharacterized LOC100381874 LIM domain-containing protein PLIM2b LIM domain-containing protein PLIM2b LIM domain-containing protein PLIM2b LIM domain-containing protein PLIM2b-like LIM domain-containing protein WLIM2a LIM domain-containing protein PLIM2b LIM domain-containing protein WLIM2a
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 4
ath03083 Polycomb repressive complex 3
ath04141 Protein processing in endoplasmic reticulum 3
ath04130 SNARE interactions in vesicular transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00280 Valine, leucine and isoleucine degradation 4
ath00640 Propanoate metabolism 3
ath00410 beta-Alanine metabolism 2
ath01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04820 Cytoskeleton in muscle cells 4
ghi04120 Ubiquitin mediated proteolysis 2
ghi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04814 Motor proteins 7
cit04145 Phagosome 6
cit04517 IgSF CAM signaling 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00040 Pentose and glucuronate interconversions 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04820 Cytoskeleton in muscle cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi00520 Amino sugar and nucleotide sugar metabolism 2
vvi01250 Biosynthesis of nucleotide sugars 2
vvi00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04820 Cytoskeleton in muscle cells 2
ppo04144 Endocytosis 2
ppo04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04141 Protein processing in endoplasmic reticulum 4
ppo04820 Cytoskeleton in muscle cells 2
ppo03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04820 Cytoskeleton in muscle cells 2
mtr00190 Oxidative phosphorylation 2
mtr04145 Phagosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00190 Oxidative phosphorylation 3
sly04145 Phagosome 2
sly00100 Steroid biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00040 Pentose and glucuronate interconversions 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00040 Pentose and glucuronate interconversions 5
nta00230 Purine metabolism 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta00051 Fructose and mannose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04820 Cytoskeleton in muscle cells 2
nta00240 Pyrimidine metabolism 2
nta01232 Nucleotide metabolism 2
nta01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00040 Pentose and glucuronate interconversions 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi01200 Carbon metabolism 3
bdi00030 Pentose phosphate pathway 2
bdi01230 Biosynthesis of amino acids 2
bdi00250 Alanine, aspartate and glutamate metabolism 2
bdi01210 2-Oxocarboxylic acid metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 824743 818577 839267 106370058 106356507 107911968 107900453 107961181 102620386 100809605 100807765 100788569 100263273 7488001 7458092 11410341 101253787 101266456 101251934 102588712 107796302 107759653 4332355 4349048 118475780 100194335 100381874 123123253 123134277 123185718 123433390 8054287 100843483 100844609
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