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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   NRPD4   RNA polymerase II, Rpb4, core protein 
 ath-u.5   NRPD4   RNA polymerase II, Rpb4, core protein 
 ath-r.7   NRPD4   RNA polymerase II, Rpb4, core protein 
 ath-m.9   NRPD4   RNA polymerase II, Rpb4, core protein 
 ath-e.2   NRPD4   RNA polymerase II, Rpb4, core protein 
 ath-m.4.bio   NRPD4   RNA polymerase II, Rpb4, core protein 
 ath-m.4.hor   NRPD4   RNA polymerase II, Rpb4, core protein 
 ath-m.4.lig   NRPD4   RNA polymerase II, Rpb4, core protein 
 ath-m.4.tis   NRPD4   RNA polymerase II, Rpb4, core protein 
 ath-u.5   FH3   formin 3 
 ath-u.5   AT4G17100   poly(U)-specific endoribonuclease-B protein 
 bra-r.6   103854706   elongation factor 2 
 bra-r.6   103865495   elongation factor 2 
 bna-r.1   106382668   elongation factor 2-like 
 bna-r.1   106391434   elongation factor 2-like 
 ghi-r.1   107948434   elongation factor 2 
 ghi-r.1   107962309   elongation factor 2 
 ghi-r.1   121213757   elongation factor 2 
 cit-r.1   102616295   elongation factor 2-like 
 cit-r.1   102616841   elongation factor 2 
 gma-u.5   100804251   elongation factor 2 
 gma-u.5   100790826   elongation factor 2 
 gma-u.5   100788357   elongation factor 2 
 vvi-u.5   100261253   elongation factor 2 
 ppo-u.5   7483076   elongation factor 2 
 ppo-u.5   7483077   elongation factor 2 
 ppo-u.5   7492112   elongation factor 2 
 mtr-u.5   11406801   elongation factor 2 
 mtr-u.5   11415386   elongation factor 2 
 mtr-u.5   11408360   elongation factor 2 
 sly-u.5   101254320   elongation factor 2 
 sot-r.1   102595666   elongation factor 2-like 
 sot-r.1   102596007   elongation factor 2 
 sot-r.1   102596567   elongation factor 2 
 nta-r.1   107805110   elongation factor 2 
 nta-r.1   107779219   elongation factor 2-like 
 nta-r.1   107770769   elongation factor 2 
 osa-u.5   4329493   elongation factor 2 
 osa-u.5   4324669   elongation factor 2 
 osa-u.5   4334959   elongation factor 2 
 zma-u.5   100272648   putative translation elongation factor family protein 
 zma-u.5   103644298   elongation factor 2 
 zma-u.5   100285098   uncharacterized LOC100285098 
 tae-r.2   123123607   elongation factor 2 
 tae-r.2   123070221   elongation factor 2 
 tae-r.2   123078663   elongation factor 2 
 hvu-r.1   123443968   elongation factor 2-like 
 hvu-r.1   123408103   elongation factor 2 
 hvu-r.1   123439759   elongation factor 2-like 
 sbi-r.1   8075554   elongation factor 2 
 sbi-r.1   110433471   elongation factor 2 
 bdi-r.1   106865398   elongation factor 2 
 bdi-r.1   100827163   elongation factor 2 
 bdi-r.1   100836272   elongation factor 2 
 cre-r.1   CHLRE_12g516200v5   uncharacterized protein 

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Top 50 coexpressed genes to NRPD4 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to NRPD4 (ath-m.4.str coexpression data)

CoexMap"827277"


athNRPD4 | Entrez gene ID : 827277    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 2 2 3 2 3 1 3 3 1 3 3 3 3 3 3 2 3 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0030422 [list] [network] siRNA processing  (31 genes)  IGI  
GO:0006352 [list] [network] DNA-templated transcription initiation  (35 genes)  IEA  
GO CC
GO:0000418 [list] [network] RNA polymerase IV complex  (16 genes)  IDA IPI  
GO:0000419 [list] [network] RNA polymerase V complex  (21 genes)  IDA IPI  
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0000166 [list] [network] nucleotide binding  (727 genes)  IEA  
Protein NP_193330.3 [sequence] [blastp]
Subcellular
localization
wolf
cyto 6,  chlo 3,  cyto_pero 3,  cyto_E.R. 3,  cyto_plas 3  (predict for NP_193330.3)
Subcellular
localization
TargetP
other 7,  scret 4  (predict for NP_193330.3)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
NRPD4
ath-u.5
for
NRPD4
ath-r.7
for
NRPD4
ath-m.9
for
NRPD4
ath-e.2
for
NRPD4
ath-m.4.bio
for
NRPD4
ath-m.4.hor
for
NRPD4
ath-m.4.lig
for
NRPD4
ath-m.4.tis
for
NRPD4
ath-u.5
for
FH3
ath-u.5
for
AT4G17100
bra-r.6
for
103854706
bra-r.6
for
103865495
bna-r.1
for
106382668
bna-r.1
for
106391434
ghi-r.1
for
107948434
ghi-r.1
for
107962309
ghi-r.1
for
121213757
cit-r.1
for
102616295
cit-r.1
for
102616841
gma-u.5
for
100804251
gma-u.5
for
100790826
gma-u.5
for
100788357
vvi-u.5
for
100261253
ppo-u.5
for
7483076
ppo-u.5
for
7483077
ppo-u.5
for
7492112
mtr-u.5
for
11406801
mtr-u.5
for
11415386
mtr-u.5
for
11408360
sly-u.5
for
101254320
sot-r.1
for
102595666
sot-r.1
for
102596007
sot-r.1
for
102596567
nta-r.1
for
107805110
nta-r.1
for
107779219
nta-r.1
for
107770769
osa-u.5
for
4329493
osa-u.5
for
4324669
osa-u.5
for
4334959
zma-u.5
for
100272648
zma-u.5
for
103644298
zma-u.5
for
100285098
tae-r.2
for
123123607
tae-r.2
for
123070221
tae-r.2
for
123078663
hvu-r.1
for
123443968
hvu-r.1
for
123408103
hvu-r.1
for
123439759
sbi-r.1
for
8075554
sbi-r.1
for
110433471
bdi-r.1
for
106865398
bdi-r.1
for
100827163
bdi-r.1
for
100836272
cre-r.1
for
CHLRE_12g516200v5


Ortholog ID: 1180
Species ath ath ath bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi ppo ppo ppo mtr mtr mtr sly sot sot sot nta nta nta osa osa osa zma zma zma tae tae tae hvu hvu hvu sbi sbi bdi bdi bdi cre
Symbol NRPD4 FH3 LOS1 LOC103854706 LOC103835225 LOC106382668 LOC106418012 LOC125580902 LOC107948434 LOC121213757 LOC107903816 LOC102616295 LOC102616841 LOC100804251 LOC100790826 LOC100788357 LOC100261253 LOC7483076 LOC7483077 LOC7492112 LOC11406801 LOC11415386 LOC25483153 LOC101254320 LOC102595666 LOC102596007 LOC102589228 LOC107779219 LOC107770769 LOC107770162 LOC4329493 LOC4324669 LOC4334959 LOC100272648 LOC103644298 LOC103644301 LOC123070221 LOC123078663 LOC123149064 LOC123443968 LOC123408103 LOC123439759 LOC8075554 LOC110436195 LOC100827163 LOC100836272 LOC100828009 CHLRE_12g516200v5
Function* RNA polymerase II, Rpb4, core protein formin 3 Ribosomal protein S5/Elongation factor G/III/V family protein elongation factor 2 elongation factor 2 elongation factor 2-like elongation factor 2-like elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2-like elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2-like elongation factor 2 elongation factor 2-like elongation factor 2-like elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 putative translation elongation factor family protein elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2-like elongation factor 2 elongation factor 2-like elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 elongation factor 2 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00740 Riboflavin metabolism 2
ath01240 Biosynthesis of cofactors 2
ath04145 Phagosome 2
ath04148 Efferocytosis 2
ath04517 IgSF CAM signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00592 alpha-Linolenic acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 4
ath03013 Nucleocytoplasmic transport 4
ath03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 3
bra00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra00970 Aminoacyl-tRNA biosynthesis 4
bra03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 4
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00970 Aminoacyl-tRNA biosynthesis 3
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00220 Arginine biosynthesis 2
bna00240 Pyrimidine metabolism 2
bna00250 Alanine, aspartate and glutamate metabolism 2
bna01240 Biosynthesis of cofactors 2
bna00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 8
ghi00300 Lysine biosynthesis 3
ghi00470 D-Amino acid metabolism 3
ghi01230 Biosynthesis of amino acids 3
ghi03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi01230 Biosynthesis of amino acids 6
ghi00300 Lysine biosynthesis 4
ghi00470 D-Amino acid metabolism 3
ghi00290 Valine, leucine and isoleucine biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00970 Aminoacyl-tRNA biosynthesis 6
ghi01230 Biosynthesis of amino acids 5
ghi00300 Lysine biosynthesis 3
ghi03013 Nucleocytoplasmic transport 2
ghi00470 D-Amino acid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 8
cit03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03013 Nucleocytoplasmic transport 3
cit03010 Ribosome 3
cit00190 Oxidative phosphorylation 2
cit00290 Valine, leucine and isoleucine biosynthesis 2
cit00770 Pantothenate and CoA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 3
gma00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00591 Linoleic acid metabolism 4
gma00040 Pentose and glucuronate interconversions 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma00970 Aminoacyl-tRNA biosynthesis 2
gma00270 Cysteine and methionine metabolism 2
gma00450 Selenocompound metabolism 2
gma01230 Biosynthesis of amino acids 2
gma03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 5
vvi03013 Nucleocytoplasmic transport 4
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03013 Nucleocytoplasmic transport 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 7
ppo03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
mtr03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00480 Glutathione metabolism 2
mtr00073 Cutin, suberine and wax biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03013 Nucleocytoplasmic transport 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 6
sly03013 Nucleocytoplasmic transport 4
sly00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 3
sot00970 Aminoacyl-tRNA biosynthesis 2
sot00230 Purine metabolism 2
sot00250 Alanine, aspartate and glutamate metabolism 2
sot01232 Nucleotide metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot00230 Purine metabolism 2
sot00250 Alanine, aspartate and glutamate metabolism 2
sot01232 Nucleotide metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot00970 Aminoacyl-tRNA biosynthesis 3
sot00230 Purine metabolism 2
sot00250 Alanine, aspartate and glutamate metabolism 2
sot01232 Nucleotide metabolism 2
sot01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03013 Nucleocytoplasmic transport 3
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03040 Spliceosome 3
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 3
osa03010 Ribosome 2
osa00260 Glycine, serine and threonine metabolism 2
osa00270 Cysteine and methionine metabolism 2
osa01200 Carbon metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 3
osa04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03013 Nucleocytoplasmic transport 5
osa00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma00970 Aminoacyl-tRNA biosynthesis 2
zma01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03013 Nucleocytoplasmic transport 7
zma03015 mRNA surveillance pathway 2
zma03018 RNA degradation 2
zma00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 6
tae00240 Pyrimidine metabolism 3
tae01240 Biosynthesis of cofactors 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 5
hvu03013 Nucleocytoplasmic transport 3
hvu00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi00970 Aminoacyl-tRNA biosynthesis 4
sbi01240 Biosynthesis of cofactors 3
sbi00860 Porphyrin metabolism 2
sbi03013 Nucleocytoplasmic transport 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi00970 Aminoacyl-tRNA biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 3
bdi04144 Endocytosis 3
bdi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre00970 Aminoacyl-tRNA biosynthesis 2
cre00260 Glycine, serine and threonine metabolism 2
cre00270 Cysteine and methionine metabolism 2
cre01230 Biosynthesis of amino acids 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 827277 827184 842058 103854706 103835225 106382668 106418012 125580902 107948434 121213757 107903816 102616295 102616841 100804251 100790826 100788357 100261253 7483076 7483077 7492112 11406801 11415386 25483153 101254320 102595666 102596007 102589228 107779219 107770769 107770162 4329493 4324669 4334959 100272648 103644298 103644301 123070221 123078663 123149064 123443968 123408103 123439759 8075554 110436195 100827163 100836272 100828009 5728754
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