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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   CSDP1   cold shock domain protein 1 
 ath-u.5   CSDP1   cold shock domain protein 1 
 ath-r.7   CSDP1   cold shock domain protein 1 
 ath-m.9   CSDP1   cold shock domain protein 1 
 ath-e.2   CSDP1   cold shock domain protein 1 
 ath-m.4.bio   CSDP1   cold shock domain protein 1 
 ath-m.4.hor   CSDP1   cold shock domain protein 1 
 ath-m.4.lig   CSDP1   cold shock domain protein 1 
 ath-m.4.tis   CSDP1   cold shock domain protein 1 
 bra-r.6   103862450   cold shock protein 1 
 bra-r.6   103871381   cold shock domain-containing protein 3 
 bna-r.1   106348415   cold shock domain-containing protein 3-like 
 bna-r.1   106451566   cold shock protein 1 
 bna-r.1   111207752   cold shock protein 1 

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Top 50 coexpressed genes to CSDP1 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CSDP1 (ath-m.4.str coexpression data)

CoexMap"829758"


athCSDP1 | Entrez gene ID : 829758    
Species ath bra bna sbi ghi cre mtr tae cit sot bdi vvi ppo sly zma osa gma nta hvu
Paralog 9 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009631 [list] [network] cold acclimation  (60 genes)  IGI  
GO:0009414 [list] [network] response to water deprivation  (426 genes)  IEP  
GO:0009409 [list] [network] response to cold  (436 genes)  IEP IGI  
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO CC
GO:0005886 [list] [network] plasma membrane  (2598 genes)  HDA  
GO:0005634 [list] [network] nucleus  (10367 genes)  ISS  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISS  
GO MF
GO:0140691 [list] [network] RNA folding chaperone  (8 genes)  IDA  
GO:0003697 [list] [network] single-stranded DNA binding  (37 genes)  IDA  
GO:0008270 [list] [network] zinc ion binding  (391 genes)  IEA  
GO:0003690 [list] [network] double-stranded DNA binding  (800 genes)  IDA  
GO:0003729 [list] [network] mRNA binding  (1514 genes)  HDA IDA  
GO:0003723 [list] [network] RNA binding  (1764 genes)  IDA  
Protein NP_001320149.1 [sequence] [blastp]
NP_001329650.1 [sequence] [blastp]
NP_195326.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  chlo 2,  nucl_plas 2,  cyto 1,  mito 1  (predict for NP_001320149.1)
nucl 6,  chlo 1,  cyto 1,  mito 1,  chlo_mito 1  (predict for NP_001329650.1)
nucl 4,  chlo 2,  nucl_plas 2,  cyto 1,  mito 1  (predict for NP_195326.1)
Subcellular
localization
TargetP
other 8  (predict for NP_001320149.1)
other 8  (predict for NP_001329650.1)
other 8  (predict for NP_195326.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
CSDP1
ath-u.5
for
CSDP1
ath-r.7
for
CSDP1
ath-m.9
for
CSDP1
ath-e.2
for
CSDP1
ath-m.4.bio
for
CSDP1
ath-m.4.hor
for
CSDP1
ath-m.4.lig
for
CSDP1
ath-m.4.tis
for
CSDP1
bra-r.6
for
103862450
bra-r.6
for
103871381
bna-r.1
for
106348415
bna-r.1
for
106451566
bna-r.1
for
111207752


Ortholog ID: 18162
Species ath bra bra bna bna bna
Symbol CSDP1 LOC103862450 LOC103871381 LOC106348415 LOC106451566 LOC111207752
Function* cold shock domain protein 1 cold shock protein 1 cold shock domain-containing protein 3 cold shock domain-containing protein 3-like cold shock protein 1 cold shock protein 1
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
ath03015 mRNA surveillance pathway 4
ath03010 Ribosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00940 Phenylpropanoid biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03015 mRNA surveillance pathway 3
bna00940 Phenylpropanoid biosynthesis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 829758 103862450 103871381 106348415 106451566 111207752
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