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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-u.5   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-r.7   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.9   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-e.2   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.4.bio   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.4.hor   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.4.lig   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-m.4.tis   AT5G08600   U3 ribonucleoprotein (Utp) family protein 
 ath-u.5   AT4G02400   U3 ribonucleoprotein (Utp) family protein 
 bra-r.6   103868214   U3 small nucleolar RNA-associated protein 14 
 bra-r.6   103836750   uncharacterized protein C57A7.06 
 bna-r.1   125586400   U3 small nucleolar RNA-associated protein 14-like 
 bna-r.1   111200819   U3 small nucleolar RNA-associated protein 14 homolog A-like 
 ghi-r.1   107946069   U3 small nucleolar RNA-associated protein 14 
 ghi-r.1   107943240   U3 small nucleolar RNA-associated protein 14 homolog A 
 ghi-r.1   107931227   U3 small nucleolar RNA-associated protein 14 
 cit-r.1   102624815   uncharacterized LOC102624815 
 gma-u.5   100811431   U3 small nucleolar RNA-associated protein 14 
 gma-u.5   100784007   uncharacterized protein C57A7.06 
 vvi-u.5   100267476   uncharacterized LOC100267476 
 ppo-u.5   7491296   uncharacterized protein C57A7.06 
 ppo-u.5   7478845   uncharacterized protein C57A7.06 
 mtr-u.5   25490252   U3 small nucleolar RNA-associated protein 14 homolog A 
 mtr-u.5   25499036   U3 small nucleolar RNA-associated protein 14 
 mtr-u.5   112416091   uncharacterized protein C57A7.06 
 sly-u.5   101245392   uncharacterized LOC101245392 
 sot-r.1   102591880   uncharacterized protein C57A7.06 
 nta-r.1   107774979   uncharacterized LOC107774979 
 nta-r.1   107789212   uncharacterized LOC107789212 
 nta-r.1   107830027   uncharacterized LOC107830027 
 osa-u.5   4332800   U3 small nucleolar RNA-associated protein 14 
 zma-u.5   103634670   U3 small nucleolar RNA-associated protein 14 
 tae-r.2   123147891   uncharacterized protein C57A7.06 
 tae-r.2   123156232   U3 small nucleolar RNA-associated protein 14 
 tae-r.2   123164685   U3 small nucleolar RNA-associated protein 14 
 hvu-r.1   123413484   uncharacterized protein C57A7.06 
 sbi-r.1   8083648   U3 small nucleolar RNA-associated protein 14 
 bdi-r.1   100843592   uncharacterized protein C57A7.06 
 cre-r.1   CHLRE_11g478966v5   uncharacterized protein 
 cre-r.1   CHLRE_11g478950v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G08600 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G08600 (ath-m.4.str coexpression data)

CoexMap"830761"


athAT5G08600 | Entrez gene ID : 830761      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 2 3 1 2 1 2 3 1 1 3 1 1 3 1 1 1 2
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03008 [list] [network] Ribosome biogenesis in eukaryotes (98 genes)
GO BP
GO:0006364 [list] [network] rRNA processing  (183 genes)  IEA  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
Protein NP_001190265.1 [sequence] [blastp]
NP_001331282.1 [sequence] [blastp]
NP_196477.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 7,  cyto 2  (predict for NP_001190265.1)
nucl 5,  cyto 3,  cysk_nucl 3,  nucl_plas 3  (predict for NP_001331282.1)
nucl 7,  cyto 2  (predict for NP_196477.1)
Subcellular
localization
TargetP
chlo 3,  mito 3  (predict for NP_001190265.1)
chlo 3,  mito 3  (predict for NP_001331282.1)
chlo 3,  mito 3  (predict for NP_196477.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT5G08600
ath-u.5
for
AT5G08600
ath-r.7
for
AT5G08600
ath-m.9
for
AT5G08600
ath-e.2
for
AT5G08600
ath-m.4.bio
for
AT5G08600
ath-m.4.hor
for
AT5G08600
ath-m.4.lig
for
AT5G08600
ath-m.4.tis
for
AT5G08600
ath-u.5
for
AT4G02400
bra-r.6
for
103868214
bra-r.6
for
103836750
bna-r.1
for
125586400
bna-r.1
for
111200819
ghi-r.1
for
107946069
ghi-r.1
for
107943240
ghi-r.1
for
107931227
cit-r.1
for
102624815
gma-u.5
for
100811431
gma-u.5
for
100784007
vvi-u.5
for
100267476
ppo-u.5
for
7491296
ppo-u.5
for
7478845
mtr-u.5
for
25490252
mtr-u.5
for
25499036
mtr-u.5
for
112416091
sly-u.5
for
101245392
sot-r.1
for
102591880
nta-r.1
for
107774979
nta-r.1
for
107789212
nta-r.1
for
107830027
osa-u.5
for
4332800
zma-u.5
for
103634670
tae-r.2
for
123147891
tae-r.2
for
123156232
tae-r.2
for
123164685
hvu-r.1
for
123413484
sbi-r.1
for
8083648
bdi-r.1
for
100843592
cre-r.1
for
CHLRE_11g478966v5
cre-r.1
for
CHLRE_11g478950v5


Ortholog ID: 5347
Species ath ath bra bra bna bna bna ghi ghi ghi cit gma gma vvi ppo ppo mtr mtr mtr sly sot nta nta nta osa zma tae tae tae hvu sbi bdi cre cre
Symbol AT5G08600 AT4G02400 LOC103868214 LOC103836750 LOC125586400 LOC111200819 LOC106381621 LOC107946069 LOC107943240 LOC107931227 LOC102624815 LOC100811431 LOC100784007 LOC100267476 LOC7491296 LOC7478845 LOC25490252 LOC25499036 LOC112416091 LOC101245392 LOC102591880 LOC107774979 LOC107789212 LOC107830027 LOC4332800 LOC103634670 LOC123147891 LOC123156232 LOC123164685 LOC123413484 LOC8083648 LOC100843592 CHLRE_11g478966v5 CHLRE_11g478950v5
Function* U3 ribonucleoprotein (Utp) family protein U3 ribonucleoprotein (Utp) family protein U3 small nucleolar RNA-associated protein 14 uncharacterized protein C57A7.06 U3 small nucleolar RNA-associated protein 14-like U3 small nucleolar RNA-associated protein 14 homolog A-like U3 small nucleolar RNA-associated protein 14 U3 small nucleolar RNA-associated protein 14 U3 small nucleolar RNA-associated protein 14 homolog A U3 small nucleolar RNA-associated protein 14 uncharacterized LOC102624815 U3 small nucleolar RNA-associated protein 14 uncharacterized protein C57A7.06 uncharacterized LOC100267476 uncharacterized protein C57A7.06 uncharacterized protein C57A7.06 U3 small nucleolar RNA-associated protein 14 homolog A U3 small nucleolar RNA-associated protein 14 uncharacterized protein C57A7.06 uncharacterized LOC101245392 uncharacterized protein C57A7.06 uncharacterized LOC107774979 uncharacterized LOC107789212 uncharacterized LOC107830027 U3 small nucleolar RNA-associated protein 14 U3 small nucleolar RNA-associated protein 14 uncharacterized protein C57A7.06 U3 small nucleolar RNA-associated protein 14 U3 small nucleolar RNA-associated protein 14 uncharacterized protein C57A7.06 U3 small nucleolar RNA-associated protein 14 uncharacterized protein C57A7.06 uncharacterized protein uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 9
ghi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03008 Ribosome biogenesis in eukaryotes 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03008 Ribosome biogenesis in eukaryotes 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr00970 Aminoacyl-tRNA biosynthesis 8
mtr03008 Ribosome biogenesis in eukaryotes 4
mtr00450 Selenocompound metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03008 Ribosome biogenesis in eukaryotes 4
sot03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03082 ATP-dependent chromatin remodeling 2
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 6
nta03013 Nucleocytoplasmic transport 5
nta03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03008 Ribosome biogenesis in eukaryotes 5
nta03082 ATP-dependent chromatin remodeling 5
nta03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03008 Ribosome biogenesis in eukaryotes 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03008 Ribosome biogenesis in eukaryotes 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 830761 828039 103868214 103836750 125586400 111200819 106381621 107946069 107943240 107931227 102624815 100811431 100784007 100267476 7491296 7478845 25490252 25499036 112416091 101245392 102591880 107774979 107789212 107830027 4332800 103634670 123147891 123156232 123164685 123413484 8083648 100843592 66055332 5722901
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