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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT5G01780   2-oxoglutarate-dependent dioxygenase family protein 
 ath-u.5   AT5G01780   2-oxoglutarate-dependent dioxygenase family protein 
 ath-r.7   AT5G01780   2-oxoglutarate-dependent dioxygenase family protein 
 ath-m.9   AT5G01780   2-oxoglutarate-dependent dioxygenase family protein 
 ath-e.2   AT5G01780   2-oxoglutarate-dependent dioxygenase family protein 
 ath-m.4.bio   AT5G01780   2-oxoglutarate-dependent dioxygenase family protein 
 ath-m.4.hor   AT5G01780   2-oxoglutarate-dependent dioxygenase family protein 
 ath-m.4.lig   AT5G01780   2-oxoglutarate-dependent dioxygenase family protein 
 ath-m.4.tis   AT5G01780   2-oxoglutarate-dependent dioxygenase family protein 
 ath-u.5   AT3G14160   2-oxoglutarate-dependent dioxygenase family protein 
 bra-r.6   103870060   uncharacterized LOC103870060 
 bna-r.1   106452247   uncharacterized LOC106452247 
 bna-r.1   111215716   uncharacterized LOC111215716 
 ghi-r.1   121230845   uncharacterized LOC121230845 
 ghi-r.1   107896809   uncharacterized LOC107896809 
 ghi-r.1   107914563   uncharacterized LOC107914563 
 cit-r.1   102630077   uncharacterized LOC102630077 
 cit-r.1   102615514   uncharacterized LOC102615514 
 gma-u.5   100809845   alpha-ketoglutarate-dependent dioxygenase AlkB homolog 
 gma-u.5   100775999   alpha-ketoglutarate-dependent dioxygenase AlkB-like 
 vvi-u.5   100246527   uncharacterized LOC100246527 
 vvi-u.5   100263508   uncharacterized LOC100263508 
 ppo-u.5   7488769   uncharacterized LOC7488769 
 ppo-u.5   7461945   uncharacterized LOC7461945 
 mtr-u.5   11425593   uncharacterized LOC11425593 
 mtr-u.5   120575952   uncharacterized LOC120575952 
 osa-u.5   4334565   uncharacterized LOC4334565 
 zma-u.5   100273226   2-oxoglutarate-dependent dioxygenase family protein 
 tae-r.2   123105617   uncharacterized LOC123105617 
 hvu-r.1   123452969   uncharacterized LOC123452969 
 bdi-r.1   100841984   uncharacterized LOC100841984 
 cre-r.1   CHLRE_09g412350v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G01780 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G01780 (ath-m.4.str coexpression data)

CoexMap"831672"


athAT5G01780 | Entrez gene ID : 831672      
Species ath bra bna ghi cit gma vvi ppo mtr osa zma tae hvu bdi cre sot sly nta sbi
Paralog 10 1 2 3 2 2 2 2 2 1 1 1 1 1 1 0 0 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0010029 [list] [network] regulation of seed germination  (105 genes)  IMP  
GO:0009845 [list] [network] seed germination  (111 genes)  IGI  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
GO:0141131 [list] [network] DNA N6-methyladenine demethylase activity  (2 genes)  IDA IMP  
GO:0035514 [list] [network] DNA demethylase activity  (14 genes)  IDA  
Protein NP_001190202.1 [sequence] [blastp]
NP_001332589.1 [sequence] [blastp]
NP_001332590.1 [sequence] [blastp]
NP_001332591.1 [sequence] [blastp]
NP_195798.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  mito 3,  nucl 1,  cyto_mito 1,  mito_plas 1  (predict for NP_001190202.1)
chlo 6,  chlo_mito 4,  nucl 1,  cyto 1,  cysk_nucl 1,  golg_plas 1  (predict for NP_001332589.1)
chlo 6,  chlo_mito 4,  nucl 1,  cyto 1,  cysk_nucl 1,  golg_plas 1  (predict for NP_001332590.1)
mito 4,  chlo 4,  cyto_mito 2,  nucl 2  (predict for NP_001332591.1)
chlo 7,  chlo_mito 5,  mito 2  (predict for NP_195798.2)
Subcellular
localization
TargetP
mito 7  (predict for NP_001190202.1)
chlo 9  (predict for NP_001332589.1)
chlo 9  (predict for NP_001332590.1)
mito 7  (predict for NP_001332591.1)
mito 5,  chlo 4  (predict for NP_195798.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT5G01780
ath-u.5
for
AT5G01780
ath-r.7
for
AT5G01780
ath-m.9
for
AT5G01780
ath-e.2
for
AT5G01780
ath-m.4.bio
for
AT5G01780
ath-m.4.hor
for
AT5G01780
ath-m.4.lig
for
AT5G01780
ath-m.4.tis
for
AT5G01780
ath-u.5
for
AT3G14160
bra-r.6
for
103870060
bna-r.1
for
106452247
bna-r.1
for
111215716
ghi-r.1
for
121230845
ghi-r.1
for
107896809
ghi-r.1
for
107914563
cit-r.1
for
102630077
cit-r.1
for
102615514
gma-u.5
for
100809845
gma-u.5
for
100775999
vvi-u.5
for
100246527
vvi-u.5
for
100263508
ppo-u.5
for
7488769
ppo-u.5
for
7461945
mtr-u.5
for
11425593
mtr-u.5
for
120575952
osa-u.5
for
4334565
zma-u.5
for
100273226
tae-r.2
for
123105617
hvu-r.1
for
123452969
bdi-r.1
for
100841984
cre-r.1
for
CHLRE_09g412350v5


Ortholog ID: 7207
Species ath ath bra bna bna ghi ghi ghi cit cit gma gma vvi vvi ppo ppo mtr mtr osa zma tae hvu bdi cre
Symbol AT5G01780 AT3G14160 LOC103870060 LOC106452247 LOC111215716 LOC107896809 LOC107914563 LOC107960284 LOC102630077 LOC102615514 LOC100809845 LOC100775999 LOC100246527 LOC100263508 LOC7488769 LOC7461945 LOC11425593 LOC120575952 LOC4334565 LOC100273226 LOC123105617 LOC123452969 LOC100841984 CHLRE_09g412350v5
Function* 2-oxoglutarate-dependent dioxygenase family protein 2-oxoglutarate-dependent dioxygenase family protein uncharacterized LOC103870060 uncharacterized LOC106452247 uncharacterized LOC111215716 uncharacterized LOC107896809 uncharacterized LOC107914563 uncharacterized LOC107960284 uncharacterized LOC102630077 uncharacterized LOC102615514 alpha-ketoglutarate-dependent dioxygenase AlkB homolog alpha-ketoglutarate-dependent dioxygenase AlkB-like uncharacterized LOC100246527 uncharacterized LOC100263508 uncharacterized LOC7488769 uncharacterized LOC7461945 uncharacterized LOC11425593 uncharacterized LOC120575952 uncharacterized LOC4334565 2-oxoglutarate-dependent dioxygenase family protein uncharacterized LOC123105617 uncharacterized LOC123452969 uncharacterized LOC100841984 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00061 Fatty acid biosynthesis 2
bna00071 Fatty acid degradation 2
bna01212 Fatty acid metabolism 2
bna04146 Peroxisome 2
bna04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 4
ghi00670 One carbon pool by folate 4
ghi00999 Biosynthesis of various plant secondary metabolites 4
ghi01230 Biosynthesis of amino acids 4
ghi01240 Biosynthesis of cofactors 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00270 Cysteine and methionine metabolism 7
ghi00670 One carbon pool by folate 7
ghi00999 Biosynthesis of various plant secondary metabolites 7
ghi01230 Biosynthesis of amino acids 7
ghi01240 Biosynthesis of cofactors 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03015 mRNA surveillance pathway 2
ghi00600 Sphingolipid metabolism 2
ghi04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 3
gma03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 5
gma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03013 Nucleocytoplasmic transport 5
vvi00970 Aminoacyl-tRNA biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04016 MAPK signaling pathway - plant 2
ppo04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 2
mtr03050 Proteasome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04517 IgSF CAM signaling 2
osa05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 4
zma04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00970 Aminoacyl-tRNA biosynthesis 6
tae04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03015 mRNA surveillance pathway 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 831672 820633 103870060 106452247 111215716 107896809 107914563 107960284 102630077 102615514 100809845 100775999 100246527 100263508 7488769 7461945 11425593 120575952 4334565 100273226 123105617 123452969 100841984 5722306
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