ATTED-II : GeneCoexpression result

Select Species^**

Orthologous genes in OrthoFinder^**

Species	Gene	Description
ath-m.4.str	AT5G22840	Protein kinase superfamily protein
ath-u.5	AT5G22840	Protein kinase superfamily protein
ath-r.7	AT5G22840	Protein kinase superfamily protein
ath-m.9	AT5G22840	Protein kinase superfamily protein
ath-e.2	AT5G22840	Protein kinase superfamily protein
ath-m.4.bio	AT5G22840	Protein kinase superfamily protein
ath-m.4.hor	AT5G22840	Protein kinase superfamily protein
ath-m.4.lig	AT5G22840	Protein kinase superfamily protein
ath-m.4.tis	AT5G22840	Protein kinase superfamily protein
ath-u.5	AT3G44850	Protein kinase superfamily protein
ath-u.5	SRPK4	ser/arg-rich protein kinase 4
bra-r.6	103841235	serine/threonine-protein kinase SRPK
bra-r.6	103845517	serine/threonine-protein kinase SRPK
bra-r.6	103851466	SRSF protein kinase 2
bna-r.1	111197825	SRSF protein kinase 1-like
bna-r.1	106371635	SRSF protein kinase 1-like
bna-r.1	106384512	SRSF protein kinase 1
ghi-r.1	107948531	SRSF protein kinase 1
ghi-r.1	107906651	serine/threonine-protein kinase SRPK
ghi-r.1	107905342	SRSF protein kinase 3
cit-r.1	102630970	uncharacterized LOC102630970
cit-r.1	102631272	uncharacterized LOC102631272
gma-u.5	100810777	serine/threonine-protein kinase SRPK
gma-u.5	100809984	SRSF protein kinase 3
gma-u.5	100803070	serine/threonine-protein kinase spk-1
vvi-u.5	100254468	uncharacterized LOC100254468
vvi-u.5	100260164	uncharacterized LOC100260164
ppo-u.5	7474920	uncharacterized LOC7474920
ppo-u.5	18100088	uncharacterized LOC18100088
ppo-u.5	18098008	uncharacterized LOC18098008
mtr-u.5	25492350	SRSF protein kinase 2
mtr-u.5	25487481	SRSF protein kinase 3
mtr-u.5	11434131	SRSF protein kinase 1
sly-u.5	101245552	uncharacterized LOC101245552
sly-u.5	101267678	uncharacterized LOC101267678
sly-u.5	101253143	uncharacterized LOC101253143
sot-r.1	102601887	serine/threonine-protein kinase SRPK-like
sot-r.1	102585264	serine/threonine-protein kinase SRPK
sot-r.1	102596093	SRSF protein kinase 3-like
nta-r.1	107766451	uncharacterized LOC107766451
nta-r.1	107784466	uncharacterized LOC107784466
nta-r.1	107791733	uncharacterized LOC107791733
osa-u.5	4334107	uncharacterized LOC4334107
zma-u.5	100381954	putative protein kinase superfamily protein
zma-u.5	100285074	uncharacterized LOC100285074
tae-r.2	123122823	SRSF protein kinase 1
tae-r.2	123105019	serine/threonine-protein kinase SRPK
tae-r.2	123113310	SRSF protein kinase 1
hvu-r.1	123452225	SRSF protein kinase 1-like
sbi-r.1	8086251	SRSF protein kinase 1
bdi-r.1	100845239	SRSF protein kinase 1
cre-r.1	CHLRE_06g278254v5	uncharacterized protein

Top 50 coexpressed genes to AT5G22840 (ath-m.4.str coexpression data)

KEGG ID	Pathway name	#genes in coex list	#genes in genome	-log10(p)	Link to the KEGG^* map (Multiple genes)

Top 50 enrichment test to AT5G22840 (ath-m.4.str coexpression data)

CoexMap"832347"

[Cytoscape]

Annotation

functional annotation

KEGG

GO BP

GO:0016310 [list] [network] phosphorylation

(529 genes)

ISS

GO CC

GO:0005634 [list] [network] nucleus

(10367 genes)

ISM

GO MF

Protein

NP_197675.1 [sequence] [blastp]

Subcellular
localization
wolf

nucl 4, cyto 4, cyto_nucl 4

(predict for NP_197675.1)

Subcellular
localization
TargetP

other 9

(predict for NP_197675.1)

Gene expression

All samples

[Expression pattern]

Tissue specificity^*

Coexpression

	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	Target				Condition-specific^*					Reference
	Gene	Function	KEGG					Entrez Gene ID	Other ID	Link	ath-m.4.str for AT5G22840	ath-u.5 for AT5G22840	ath-r.7 for AT5G22840	ath-m.9 for AT5G22840	ath-e.2 for AT5G22840	ath-m.4.bio for AT5G22840	ath-m.4.hor for AT5G22840	ath-m.4.lig for AT5G22840	ath-m.4.tis for AT5G22840	ath-u.5 for AT3G44850	ath-u.5 for SRPK4	bra-r.6 for 103841235	bra-r.6 for 103845517	bra-r.6 for 103851466	bna-r.1 for 111197825	bna-r.1 for 106371635	bna-r.1 for 106384512	ghi-r.1 for 107948531	ghi-r.1 for 107906651	ghi-r.1 for 107905342	cit-r.1 for 102630970	cit-r.1 for 102631272	gma-u.5 for 100810777	gma-u.5 for 100809984	gma-u.5 for 100803070	vvi-u.5 for 100254468	vvi-u.5 for 100260164	ppo-u.5 for 7474920	ppo-u.5 for 18100088	ppo-u.5 for 18098008	mtr-u.5 for 25492350	mtr-u.5 for 25487481	mtr-u.5 for 11434131	sly-u.5 for 101245552	sly-u.5 for 101267678	sly-u.5 for 101253143	sot-r.1 for 102601887	sot-r.1 for 102585264	sot-r.1 for 102596093	nta-r.1 for 107766451	nta-r.1 for 107784466	nta-r.1 for 107791733	osa-u.5 for 4334107	zma-u.5 for 100381954	zma-u.5 for 100285074	tae-r.2 for 123122823	tae-r.2 for 123105019	tae-r.2 for 123113310	hvu-r.1 for 123452225	sbi-r.1 for 8086251	bdi-r.1 for 100845239	cre-r.1 for CHLRE_06g278254v5

Ortholog

Ortholog ID: 2732

Species

ath

bra

bna

ghi

cit

gma

vvi

ppo

mtr

sly

sot

nta

osa

zma

tae

hvu

sbi

bdi

cre

Symbol

SRPK4

Function^*

Protein kinase superfamily protein

ser/arg-rich protein kinase 4

serine/threonine-protein kinase SRPK

SRSF protein kinase 2

SRSF protein kinase 1-like

SRSF protein kinase 1

SRSF protein kinase 3

SRSF protein kinase 2

uncharacterized LOC102630970

uncharacterized LOC102631272

serine/threonine-protein kinase SRPK

SRSF protein kinase 3

SRSF protein kinase 2

uncharacterized LOC100254468

uncharacterized LOC100260164

uncharacterized LOC7474920

uncharacterized LOC18100088

uncharacterized LOC18098008

SRSF protein kinase 2

SRSF protein kinase 3

SRSF protein kinase 1

uncharacterized LOC101245552

uncharacterized LOC101253143

uncharacterized LOC101249399

serine/threonine-protein kinase SRPK-like

serine/threonine-protein kinase SRPK

SRSF protein kinase 1-like

uncharacterized LOC107784466

uncharacterized LOC107791733

uncharacterized LOC107832169

uncharacterized LOC4334107

putative protein kinase superfamily protein

uncharacterized LOC100285074

SRSF protein kinase 1

serine/threonine-protein kinase SRPK

SRSF protein kinase 1

SRSF protein kinase 1-like

SRSF protein kinase 1

uncharacterized protein

Coexmap

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Coexpression

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KEGG Info

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03008	Ribosome biogenesis in eukaryotes	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ath03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bra03040	Spliceosome	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bna00970	Aminoacyl-tRNA biosynthesis	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00280	Valine, leucine and isoleucine degradation	2
ghi00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ghi00650	Butanoate metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cit03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03008	Ribosome biogenesis in eukaryotes	6
gma03013	Nucleocytoplasmic transport	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
gma03013	Nucleocytoplasmic transport	2
gma03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04141	Protein processing in endoplasmic reticulum	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
vvi04142	Lysosome	2
vvi04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03008	Ribosome biogenesis in eukaryotes	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03015	mRNA surveillance pathway	2
ppo04382	Cornified envelope formation	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
ppo03010	Ribosome	3
ppo03013	Nucleocytoplasmic transport	2
ppo03008	Ribosome biogenesis in eukaryotes	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
mtr03013	Nucleocytoplasmic transport	2
mtr03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sly04712	Circadian rhythm - plant	3
sly00561	Glycerolipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot00640	Propanoate metabolism	2
sot01200	Carbon metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sot04141	Protein processing in endoplasmic reticulum	6
sot04626	Plant-pathogen interaction	3
sot03040	Spliceosome	2
sot04144	Endocytosis	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	2
nta00480	Glutathione metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta03018	RNA degradation	4
nta03083	Polycomb repressive complex	2
nta03250	Viral life cycle - HIV-1	2
nta00561	Glycerolipid metabolism	2
nta00564	Glycerophospholipid metabolism	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
nta00270	Cysteine and methionine metabolism	2
nta00480	Glutathione metabolism	2
nta01240	Biosynthesis of cofactors	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	9
zma03015	mRNA surveillance pathway	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
zma03040	Spliceosome	5

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6
tae03015	mRNA surveillance pathway	3
tae04136	Autophagy - other	3
tae04382	Cornified envelope formation	3

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	9

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
tae03040	Spliceosome	6

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
hvu03082	ATP-dependent chromatin remodeling	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
sbi03015	mRNA surveillance pathway	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
bdi03040	Spliceosome	2

KEGG^* ID	Title	#genes	Link to the KEGG^* map (Multiple genes)
cre01232	Nucleotide metabolism	3
cre00240	Pyrimidine metabolism	3
cre01240	Biosynthesis of cofactors	3
cre00230	Purine metabolism	2

Expression

Expression pattern

Entrez Gene ID^*

832347

823619

824469

103841235

103845517

103851466

111197825

106371635

106384512

107905342

107957520

121214031

102630970

102631272

100810777

100809984

100791829

100254468

100260164

7474920

18100088

18098008

25492350

25487481

11434131

101245552

101253143

101249399

102601887

102585264

102588730

107784466

107791733

107832169

4334107

100381954

100285074

123122823

123105019

123113310

123452225

8086251

100845239

5723609

The preparation time of this page was 0.2 [sec].


Species	ath	bra	bna	ghi	cit	gma	vvi	ppo	mtr	sly	sot	nta	osa	zma	tae	hvu	sbi	bdi	cre
Paralog	11	3	3	3	2	3	2	3	3	3	3	3	1	2	3	1	1	1	1

Select Species**

Orthologous genes in OrthoFinder**

Top 50 coexpressed genes to AT5G22840 (ath-m.4.str coexpression data)

Top 50 enrichment test to AT5G22840 (ath-m.4.str coexpression data)

Select Species^**

Orthologous genes in OrthoFinder^**