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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT5G55060   Rab3 GTPase-activating protein catalytic subunit 
 ath-u.5   AT5G55060   Rab3 GTPase-activating protein catalytic subunit 
 ath-r.7   AT5G55060   Rab3 GTPase-activating protein catalytic subunit 
 ath-m.9   AT5G55060   Rab3 GTPase-activating protein catalytic subunit 
 ath-e.2   AT5G55060   Rab3 GTPase-activating protein catalytic subunit 
 ath-m.4.bio   AT5G55060   Rab3 GTPase-activating protein catalytic subunit 
 ath-m.4.hor   AT5G55060   Rab3 GTPase-activating protein catalytic subunit 
 ath-m.4.lig   AT5G55060   Rab3 GTPase-activating protein catalytic subunit 
 ath-m.4.tis   AT5G55060   Rab3 GTPase-activating protein catalytic subunit 
 bra-r.6   103844952   uncharacterized LOC103844952 
 bra-r.6   103857008   rab3 GTPase-activating protein catalytic subunit-like 
 bna-r.1   111211574   rab3 GTPase-activating protein catalytic subunit-like 
 bna-r.1   111201422   uncharacterized LOC111201422 
 bna-r.1   106351593   rab3 GTPase-activating protein catalytic subunit-like 
 ghi-r.1   107918146   rab3 GTPase-activating protein catalytic subunit 
 ghi-r.1   107932713   uncharacterized LOC107932713 
 ghi-r.1   107922641   uncharacterized LOC107922641 
 cit-r.1   102623057   uncharacterized LOC102623057 
 gma-u.5   100818643   uncharacterized LOC100818643 
 gma-u.5   100800515   rab3 GTPase-activating protein catalytic subunit 
 gma-u.5   100798096   uncharacterized LOC100798096 
 vvi-u.5   100265786   uncharacterized LOC100265786 
 ppo-u.5   7483626   uncharacterized LOC7483626 
 mtr-u.5   11429987   rab3 GTPase-activating protein catalytic subunit 
 sly-u.5   101244206   uncharacterized LOC101244206 
 sot-r.1   102605619   rab3 GTPase-activating protein catalytic subunit 
 nta-r.1   107789087   uncharacterized LOC107789087 
 nta-r.1   107781904   uncharacterized LOC107781904 
 osa-u.5   4343357   uncharacterized LOC4343357 
 zma-u.5   103633215   rab3 GTPase-activating protein catalytic subunit 
 tae-r.2   123044703   rab3 GTPase-activating protein catalytic subunit 
 tae-r.2   123052566   rab3 GTPase-activating protein catalytic subunit 
 tae-r.2   123188452   rab3 GTPase-activating protein catalytic subunit 
 hvu-r.1   123425922   rab3 GTPase-activating protein catalytic subunit 
 sbi-r.1   8077496   uncharacterized LOC8077496 
 bdi-r.1   100839652   rab3 GTPase-activating protein catalytic subunit 

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Top 50 coexpressed genes to AT5G55060 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G55060 (ath-m.4.str coexpression data)

CoexMap"835597"


athAT5G55060 | Entrez gene ID : 835597      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 3 1 3 1 1 1 1 1 2 1 1 3 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_001190541.1 [sequence] [blastp]
NP_001318800.1 [sequence] [blastp]
NP_200317.2 [sequence] [blastp]
Subcellular
localization
wolf
nucl 3,  chlo 3,  E.R. 2,  cysk_nucl 2,  plas 1,  vacu 1  (predict for NP_001190541.1)
nucl 3,  chlo 3,  E.R. 2,  cysk_nucl 2,  plas 1,  vacu 1  (predict for NP_001318800.1)
chlo 5,  E.R. 2,  nucl 1,  cysk_nucl 1,  E.R._plas 1  (predict for NP_200317.2)
Subcellular
localization
TargetP
other 8  (predict for NP_001190541.1)
other 8  (predict for NP_001318800.1)
chlo 6  (predict for NP_200317.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT5G55060
ath-u.5
for
AT5G55060
ath-r.7
for
AT5G55060
ath-m.9
for
AT5G55060
ath-e.2
for
AT5G55060
ath-m.4.bio
for
AT5G55060
ath-m.4.hor
for
AT5G55060
ath-m.4.lig
for
AT5G55060
ath-m.4.tis
for
AT5G55060
bra-r.6
for
103844952
bra-r.6
for
103857008
bna-r.1
for
111211574
bna-r.1
for
111201422
bna-r.1
for
106351593
ghi-r.1
for
107918146
ghi-r.1
for
107932713
ghi-r.1
for
107922641
cit-r.1
for
102623057
gma-u.5
for
100818643
gma-u.5
for
100800515
gma-u.5
for
100798096
vvi-u.5
for
100265786
ppo-u.5
for
7483626
mtr-u.5
for
11429987
sly-u.5
for
101244206
sot-r.1
for
102605619
nta-r.1
for
107789087
nta-r.1
for
107781904
osa-u.5
for
4343357
zma-u.5
for
103633215
tae-r.2
for
123044703
tae-r.2
for
123052566
tae-r.2
for
123188452
hvu-r.1
for
123425922
sbi-r.1
for
8077496
bdi-r.1
for
100839652


Ortholog ID: 6377
Species ath bra bra bna bna bna ghi ghi ghi cit gma gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT5G55060 LOC103844952 LOC103857008 LOC111211574 LOC106410870 LOC106420841 LOC107918146 LOC107932713 LOC107922641 LOC102623057 LOC100800515 LOC100798096 LOC100788608 LOC100265786 LOC7483626 LOC11429987 LOC101244206 LOC102605619 LOC107789087 LOC107781904 LOC4343357 LOC103633215 LOC123044703 LOC123052566 LOC123188452 LOC123425922 LOC8077496 LOC100839652
Function* Rab3 GTPase-activating protein catalytic subunit uncharacterized LOC103844952 rab3 GTPase-activating protein catalytic subunit-like rab3 GTPase-activating protein catalytic subunit-like uncharacterized LOC106410870 rab3 GTPase-activating protein catalytic subunit rab3 GTPase-activating protein catalytic subunit uncharacterized LOC107932713 uncharacterized LOC107922641 uncharacterized LOC102623057 rab3 GTPase-activating protein catalytic subunit uncharacterized LOC100798096 uncharacterized LOC100788608 uncharacterized LOC100265786 uncharacterized LOC7483626 rab3 GTPase-activating protein catalytic subunit uncharacterized LOC101244206 rab3 GTPase-activating protein catalytic subunit uncharacterized LOC107789087 uncharacterized LOC107781904 uncharacterized LOC4343357 rab3 GTPase-activating protein catalytic subunit rab3 GTPase-activating protein catalytic subunit rab3 GTPase-activating protein catalytic subunit rab3 GTPase-activating protein catalytic subunit rab3 GTPase-activating protein catalytic subunit uncharacterized LOC8077496 rab3 GTPase-activating protein catalytic subunit
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath00561 Glycerolipid metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04136 Autophagy - other 2
bra00250 Alanine, aspartate and glutamate metabolism 2
bra01210 2-Oxocarboxylic acid metabolism 2
bra01230 Biosynthesis of amino acids 2
bra00280 Valine, leucine and isoleucine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00330 Arginine and proline metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04626 Plant-pathogen interaction 3
ghi04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04142 Lysosome 3
gma04144 Endocytosis 3
gma05100 Bacterial invasion of epithelial cells 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04814 Motor proteins 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00230 Purine metabolism 2
nta00232 Caffeine metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma00562 Inositol phosphate metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae00061 Fatty acid biosynthesis 3
tae00071 Fatty acid degradation 3
tae01212 Fatty acid metabolism 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00511 Other glycan degradation 3
tae00600 Sphingolipid metabolism 3
tae04382 Cornified envelope formation 3
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00562 Inositol phosphate metabolism 3
tae04070 Phosphatidylinositol signaling system 3
tae04517 IgSF CAM signaling 3
tae00510 N-Glycan biosynthesis 2
tae00513 Various types of N-glycan biosynthesis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu04814 Motor proteins 2
hvu04144 Endocytosis 2
hvu00071 Fatty acid degradation 2
hvu01212 Fatty acid metabolism 2
hvu04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi04144 Endocytosis 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04145 Phagosome 3
bdi00230 Purine metabolism 2
bdi00240 Pyrimidine metabolism 2
bdi01232 Nucleotide metabolism 2
bdi04144 Endocytosis 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835597 103844952 103857008 111211574 106410870 106420841 107918146 107932713 107922641 102623057 100800515 100798096 100788608 100265786 7483626 11429987 101244206 102605619 107789087 107781904 4343357 103633215 123044703 123052566 123188452 123425922 8077496 100839652
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