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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT5G55140   ribosomal protein L30 family protein 
 ath-u.5   AT5G55140   ribosomal protein L30 family protein 
 ath-r.7   AT5G55140   ribosomal protein L30 family protein 
 ath-m.9   AT5G55140   ribosomal protein L30 family protein 
 ath-e.2   AT5G55140   ribosomal protein L30 family protein 
 ath-m.4.bio   AT5G55140   ribosomal protein L30 family protein 
 ath-m.4.hor   AT5G55140   ribosomal protein L30 family protein 
 ath-m.4.lig   AT5G55140   ribosomal protein L30 family protein 
 ath-m.4.tis   AT5G55140   ribosomal protein L30 family protein 
 bra-r.6   103844960   50S ribosomal protein L30 
 bra-r.6   103851899   50S ribosomal protein L30 
 bna-r.1   106420916   50S ribosomal protein L30 
 bna-r.1   106370251   50S ribosomal protein L30 
 bna-r.1   106418474   50S ribosomal protein L30-like 
 ghi-r.1   107927825   50S ribosomal protein L30 
 ghi-r.1   107908760   50S ribosomal protein L30 
 cit-r.1   102614536   uncharacterized LOC102614536 
 gma-u.5   100306695   uncharacterized LOC100306695 
 gma-u.5   100819606   50S ribosomal protein L30 
 ppo-u.5   7489881   uncharacterized LOC7489881 
 ppo-u.5   7462077   uncharacterized LOC7462077 
 mtr-u.5   25502138   50S ribosomal protein L30 
 mtr-u.5   25500447   50S ribosomal protein L30 
 sly-u.5   101257728   uncharacterized LOC101257728 
 sot-r.1   102589641   50S ribosomal protein L30 
 nta-r.1   107821148   uncharacterized LOC107821148 
 nta-r.1   107820945   uncharacterized LOC107820945 
 nta-r.1   107776146   uncharacterized LOC107776146 
 osa-u.5   4340949   uncharacterized LOC4340949 
 osa-u.5   4344476   uncharacterized LOC4344476 
 zma-u.5   100280558   uncharacterized LOC100280558 
 zma-u.5   100285956   uncharacterized LOC100285956 
 tae-r.2   123184502   uncharacterized LOC123184502 
 tae-r.2   123051291   uncharacterized LOC123051291 
 tae-r.2   123043415   uncharacterized LOC123043415 
 hvu-r.1   123424504   uncharacterized LOC123424504 
 sbi-r.1   8079713   uncharacterized LOC8079713 
 bdi-r.1   100845563   50S ribosomal protein L30 
 cre-r.1   CHLRE_05g234659v5   uncharacterized protein 

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Top 50 coexpressed genes to AT5G55140 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G55140 (ath-m.4.str coexpression data)

CoexMap"835607"


athAT5G55140 | Entrez gene ID : 835607      
Species ath bra bna ghi cit gma ppo mtr sly sot nta osa zma tae hvu sbi bdi cre vvi
Paralog 9 2 3 2 1 2 2 2 1 1 3 2 2 3 1 1 1 1 0
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO:0006412 [list] [network] translation  (926 genes)  IEA  
GO CC
GO MF
GO:0003735 [list] [network] structural constituent of ribosome  (75 genes)  IEA  
Protein NP_568821.1 [sequence] [blastp]
Subcellular
localization
wolf
mito 6,  chlo 4  (predict for NP_568821.1)
Subcellular
localization
TargetP
mito 6  (predict for NP_568821.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT5G55140
ath-u.5
for
AT5G55140
ath-r.7
for
AT5G55140
ath-m.9
for
AT5G55140
ath-e.2
for
AT5G55140
ath-m.4.bio
for
AT5G55140
ath-m.4.hor
for
AT5G55140
ath-m.4.lig
for
AT5G55140
ath-m.4.tis
for
AT5G55140
bra-r.6
for
103844960
bra-r.6
for
103851899
bna-r.1
for
106420916
bna-r.1
for
106370251
bna-r.1
for
106418474
ghi-r.1
for
107927825
ghi-r.1
for
107908760
cit-r.1
for
102614536
gma-u.5
for
100306695
gma-u.5
for
100819606
ppo-u.5
for
7489881
ppo-u.5
for
7462077
mtr-u.5
for
25502138
mtr-u.5
for
25500447
sly-u.5
for
101257728
sot-r.1
for
102589641
nta-r.1
for
107821148
nta-r.1
for
107820945
nta-r.1
for
107776146
osa-u.5
for
4340949
osa-u.5
for
4344476
zma-u.5
for
100280558
zma-u.5
for
100285956
tae-r.2
for
123184502
tae-r.2
for
123051291
tae-r.2
for
123043415
hvu-r.1
for
123424504
sbi-r.1
for
8079713
bdi-r.1
for
100845563
cre-r.1
for
CHLRE_05g234659v5


Ortholog ID: 6379
Species ath bra bra bna bna bna ghi ghi cit gma gma ppo ppo mtr mtr sly sot nta nta nta osa osa zma zma tae tae tae hvu sbi bdi cre
Symbol AT5G55140 LOC103844960 LOC103851899 LOC106420916 LOC106418474 LOC111198631 LOC107927825 LOC107908760 LOC102614536 LOC100306695 LOC100819606 LOC7489881 LOC7462077 LOC25502138 LOC25500447 LOC101257728 LOC102589641 LOC107821148 LOC107820945 LOC107822410 LOC4340949 LOC4344476 LOC100280558 LOC100285956 LOC123184502 LOC123051291 LOC123043415 LOC123424504 LOC8079713 LOC100845563 CHLRE_05g234659v5
Function* ribosomal protein L30 family protein 50S ribosomal protein L30 50S ribosomal protein L30 50S ribosomal protein L30 50S ribosomal protein L30-like 50S ribosomal protein L30 50S ribosomal protein L30 50S ribosomal protein L30 uncharacterized LOC102614536 uncharacterized LOC100306695 50S ribosomal protein L30 uncharacterized LOC7489881 uncharacterized LOC7462077 50S ribosomal protein L30 50S ribosomal protein L30 uncharacterized LOC101257728 50S ribosomal protein L30 uncharacterized LOC107821148 uncharacterized LOC107820945 uncharacterized LOC107822410 uncharacterized LOC4340949 uncharacterized LOC4344476 uncharacterized LOC100280558 uncharacterized LOC100285956 uncharacterized LOC123184502 uncharacterized LOC123051291 uncharacterized LOC123043415 uncharacterized LOC123424504 uncharacterized LOC8079713 50S ribosomal protein L30 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
ghi04141 Protein processing in endoplasmic reticulum 3
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 14
ghi04141 Protein processing in endoplasmic reticulum 3
ghi03420 Nucleotide excision repair 2
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 6
gma00190 Oxidative phosphorylation 2
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 8
ppo03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 6
mtr03050 Proteasome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 4
sly04141 Protein processing in endoplasmic reticulum 4
sly00510 N-Glycan biosynthesis 3
sly00513 Various types of N-glycan biosynthesis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03020 RNA polymerase 4
sot03420 Nucleotide excision repair 4
sot03010 Ribosome 3
sot03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 2
nta00520 Amino sugar and nucleotide sugar metabolism 2
nta01250 Biosynthesis of nucleotide sugars 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03083 Polycomb repressive complex 4
nta04120 Ubiquitin mediated proteolysis 4
nta04141 Protein processing in endoplasmic reticulum 4
nta03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 11
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 9
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 7
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 10
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03040 Spliceosome 6
cre03010 Ribosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835607 103844960 103851899 106420916 106418474 111198631 107927825 107908760 102614536 100306695 100819606 7489881 7462077 25502138 25500447 101257728 102589641 107821148 107820945 107822410 4340949 4344476 100280558 100285956 123184502 123051291 123043415 123424504 8079713 100845563 5726193
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