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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT5G58420   Ribosomal protein S4 (RPS4A) family protein 
 ath-u.5   AT5G58420   Ribosomal protein S4 (RPS4A) family protein 
 ath-r.7   AT5G58420   Ribosomal protein S4 (RPS4A) family protein 
 ath-m.9   AT5G58420   Ribosomal protein S4 (RPS4A) family protein 
 ath-e.2   AT5G58420   Ribosomal protein S4 (RPS4A) family protein 
 ath-m.4.bio   AT5G58420   Ribosomal protein S4 (RPS4A) family protein 
 ath-m.4.hor   AT5G58420   Ribosomal protein S4 (RPS4A) family protein 
 ath-m.4.lig   AT5G58420   Ribosomal protein S4 (RPS4A) family protein 
 ath-m.4.tis   AT5G58420   Ribosomal protein S4 (RPS4A) family protein 
 ath-u.5   AT2G17360   Ribosomal protein S4 (RPS4A) family protein 
 ath-u.5   AT5G07090   Ribosomal protein S4 (RPS4A) family protein 
 bra-r.6   103855714   40S ribosomal protein S4-1 
 bra-r.6   103856693   40S ribosomal protein S4-2 
 bra-r.6   103850644   40S ribosomal protein S4-1 
 bna-r.1   106419357   40S ribosomal protein S4-1-like 
 bna-r.1   106422591   40S ribosomal protein S4-1 
 bna-r.1   106376284   40S ribosomal protein S4-2-like 
 ghi-r.1   107896794   40S ribosomal protein S4-like 
 ghi-r.1   107899589   40S ribosomal protein S4-like 
 ghi-r.1   107914616   40S ribosomal protein S4-like 
 cit-r.1   102612009   40S ribosomal protein S4-3 
 cit-r.1   102626610   40S ribosomal protein S4-2 
 gma-u.5   547645   40S ribosomal S4 protein 
 gma-u.5   100801792   40S ribosomal protein S4 
 gma-u.5   100795220   40S ribosomal protein S4-1 
 vvi-u.5   100262686   small ribosomal subunit protein eS4x 
 vvi-u.5   100263779   small ribosomal subunit protein eS4 
 vvi-u.5   100244922   small ribosomal subunit protein eS4z 
 ppo-u.5   7468069   40S ribosomal protein S4-3 
 ppo-u.5   7457756   40S ribosomal protein S4-1 
 ppo-u.5   7460394   40S ribosomal protein S4-3 
 mtr-u.5   11412826   40S ribosomal protein S4-2 
 mtr-u.5   11411552   40S ribosomal protein S4 
 mtr-u.5   11407406   40S ribosomal protein S4-1 
 sly-u.5   101251246   small ribosomal subunit protein eS4 
 sly-u.5   101246828   small ribosomal subunit protein eS4 
 sly-u.5   101251743   small ribosomal subunit protein eS4 
 sot-r.1   102605939   40S ribosomal protein S4-like 
 sot-r.1   RPS4   40S ribosomal protein S4 
 sot-r.1   102588047   40S ribosomal protein S4-like 
 nta-r.1   107776966   small ribosomal subunit protein eS4 
 nta-r.1   107832245   small ribosomal subunit protein eS4 
 nta-r.1   107807997   small ribosomal subunit protein eS4-like 
 osa-u.5   4338571   small ribosomal subunit protein eS4-like 
 osa-u.5   4328016   40S ribosomal protein S4-like 
 osa-u.5   4326022   small ribosomal subunit protein eS4-like 
 zma-u.5   103644306   40S ribosomal protein S4-like 
 zma-u.5   101027121   40S ribosomal protein S4 
 tae-r.2   123191404   40S ribosomal protein S4 
 tae-r.2   123112799   40S ribosomal protein S4 
 hvu-r.1   123425577   40S ribosomal protein S4 
 sbi-r.1   8079649   40S ribosomal protein S4 
 sbi-r.1   8075349   40S ribosomal protein S4 
 sbi-r.1   8062716   40S ribosomal protein S4 
 bdi-r.1   100846406   40S ribosomal protein S4 
 cre-r.1   CHLRE_06g308250v5   ribosomal protein S4 

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Top 50 coexpressed genes to AT5G58420 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT5G58420 (ath-m.4.str coexpression data)

CoexMap"835955"


athAT5G58420 | Entrez gene ID : 835955    
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 11 3 3 3 2 3 3 3 3 3 3 3 3 2 2 1 3 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03010 [list] [network] Ribosome (394 genes)
GO BP
GO CC
GO:0022627 [list] [network] cytosolic small ribosomal subunit  (93 genes)  HDA  
GO:0022626 [list] [network] cytosolic ribosome  (295 genes)  HDA  
GO:0005730 [list] [network] nucleolus  (394 genes)  HDA  
GO:0005794 [list] [network] Golgi apparatus  (1198 genes)  RCA  
GO:0009536 [list] [network] plastid  (5443 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  ISM  
GO MF
Protein NP_200650.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  mito 4,  chlo_mito 4  (predict for NP_200650.1)
Subcellular
localization
TargetP
mito 5,  other 3  (predict for NP_200650.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT5G58420
ath-u.5
for
AT5G58420
ath-r.7
for
AT5G58420
ath-m.9
for
AT5G58420
ath-e.2
for
AT5G58420
ath-m.4.bio
for
AT5G58420
ath-m.4.hor
for
AT5G58420
ath-m.4.lig
for
AT5G58420
ath-m.4.tis
for
AT5G58420
ath-u.5
for
AT2G17360
ath-u.5
for
AT5G07090
bra-r.6
for
103855714
bra-r.6
for
103856693
bra-r.6
for
103850644
bna-r.1
for
106419357
bna-r.1
for
106422591
bna-r.1
for
106376284
ghi-r.1
for
107896794
ghi-r.1
for
107899589
ghi-r.1
for
107914616
cit-r.1
for
102612009
cit-r.1
for
102626610
gma-u.5
for
547645
gma-u.5
for
100801792
gma-u.5
for
100795220
vvi-u.5
for
100262686
vvi-u.5
for
100263779
vvi-u.5
for
100244922
ppo-u.5
for
7468069
ppo-u.5
for
7457756
ppo-u.5
for
7460394
mtr-u.5
for
11412826
mtr-u.5
for
11411552
mtr-u.5
for
11407406
sly-u.5
for
101251246
sly-u.5
for
101246828
sly-u.5
for
101251743
sot-r.1
for
102605939
sot-r.1
for
RPS4
sot-r.1
for
102588047
nta-r.1
for
107776966
nta-r.1
for
107832245
nta-r.1
for
107807997
osa-u.5
for
4338571
osa-u.5
for
4328016
osa-u.5
for
4326022
zma-u.5
for
103644306
zma-u.5
for
101027121
tae-r.2
for
123191404
tae-r.2
for
123112799
hvu-r.1
for
123425577
sbi-r.1
for
8079649
sbi-r.1
for
8075349
sbi-r.1
for
8062716
bdi-r.1
for
100846406
cre-r.1
for
CHLRE_06g308250v5


Ortholog ID: 1224
Species ath ath ath bra bra bra bna bna bna ghi ghi ghi cit cit gma gma gma vvi vvi vvi ppo ppo ppo mtr mtr mtr sly sly sly sot sot sot nta nta nta osa osa osa zma zma tae tae hvu sbi sbi sbi bdi cre
Symbol AT5G58420 AT2G17360 AT5G07090 LOC103855714 LOC103856693 LOC103851639 LOC106387488 LOC106446095 LOC106420507 LOC107928593 LOC107943204 LOC121206311 LOC102612009 LOC102626610 LOC547645 LOC100801792 LOC100500000 LOC100262686 LOC100263779 LOC100244922 LOC7468069 LOC7460394 LOC7478915 LOC11412826 LOC11411552 LOC11407406 LOC101246828 LOC101250951 LOC104645898 LOC102605939 RPS4 LOC102587726 LOC107789333 LOC107778484 LOC107786652 LOC4338571 LOC4328016 LOC4326022 LOC103644306 LOC101027121 LOC123191404 LOC123112799 LOC123425577 LOC8079649 LOC8075349 LOC8062716 LOC100846406 CHLRE_06g308250v5
Function* Ribosomal protein S4 (RPS4A) family protein Ribosomal protein S4 (RPS4A) family protein Ribosomal protein S4 (RPS4A) family protein 40S ribosomal protein S4-1 40S ribosomal protein S4-2 40S ribosomal protein S4-1 40S ribosomal protein S4-1-like 40S ribosomal protein S4-1-like 40S ribosomal protein S4-1-like 40S ribosomal protein S4-like 40S ribosomal protein S4-like 40S ribosomal protein S4-like 40S ribosomal protein S4-3 40S ribosomal protein S4-2 40S ribosomal S4 protein 40S ribosomal protein S4 putative 40S ribosomal protein S4 small ribosomal subunit protein eS4x small ribosomal subunit protein eS4 small ribosomal subunit protein eS4z 40S ribosomal protein S4-3 40S ribosomal protein S4-3 40S ribosomal protein S4-2 40S ribosomal protein S4-2 40S ribosomal protein S4 40S ribosomal protein S4-1 small ribosomal subunit protein eS4 small ribosomal subunit protein eS4 small ribosomal subunit protein eS4 40S ribosomal protein S4-like 40S ribosomal protein S4 40S ribosomal protein S4-like small ribosomal subunit protein eS4 small ribosomal subunit protein eS4-like small ribosomal subunit protein eS4 small ribosomal subunit protein eS4-like 40S ribosomal protein S4-like small ribosomal subunit protein eS4-like 40S ribosomal protein S4-like 40S ribosomal protein S4 40S ribosomal protein S4 40S ribosomal protein S4 40S ribosomal protein S4 40S ribosomal protein S4 40S ribosomal protein S4 40S ribosomal protein S4 40S ribosomal protein S4 ribosomal protein S4
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03010 Ribosome 2
bra03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03010 Ribosome 6
bna00250 Alanine, aspartate and glutamate metabolism 2
bna01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03010 Ribosome 19
ghi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03010 Ribosome 15
cit04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
gma03008 Ribosome biogenesis in eukaryotes 4
gma03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 16
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi03010 Ribosome 18
vvi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 21
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 19
ppo04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 15
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 21
sly04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 13
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03010 Ribosome 20
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 17
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 14
nta04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03010 Ribosome 12
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 20
osa04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 14
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03010 Ribosome 5
tae03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 19
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 17
sbi03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 21
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03010 Ribosome 10
sbi03083 Polycomb repressive complex 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi04141 Protein processing in endoplasmic reticulum 2
sbi03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03010 Ribosome 18
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03010 Ribosome 19
cre00220 Arginine biosynthesis 2
cre00250 Alanine, aspartate and glutamate metabolism 2
cre00630 Glyoxylate and dicarboxylate metabolism 2
cre00910 Nitrogen metabolism 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 835955 816243 830600 103855714 103856693 103851639 106387488 106446095 106420507 107928593 107943204 121206311 102612009 102626610 547645 100801792 100500000 100262686 100263779 100244922 7468069 7460394 7478915 11412826 11411552 11407406 101246828 101250951 104645898 102605939 102604933 102587726 107789333 107778484 107786652 4338571 4328016 4326022 103644306 101027121 123191404 123112799 123425577 8079649 8075349 8062716 100846406 5716844
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