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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT1G02420   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   AT1G02420   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   AT1G02420   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   AT1G02420   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   AT1G02420   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   AT1G02420   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103836652   putative pentatricopeptide repeat-containing protein At1g02420 
 bna-r.1   125576679   putative pentatricopeptide repeat-containing protein At1g02420 
 bna-r.1   111211305   putative pentatricopeptide repeat-containing protein At1g02420 
 bna-r.1   125596613   putative pentatricopeptide repeat-containing protein At1g02420 
 ghi-r.1   107924181   putative pentatricopeptide repeat-containing protein At1g02420 
 ghi-r.1   107912299   putative pentatricopeptide repeat-containing protein At1g02420 
 cit-r.1   102617160   putative pentatricopeptide repeat-containing protein At1g02420 
 gma-u.5   100798456   putative pentatricopeptide repeat-containing protein At1g02420 
 vvi-u.5   100245186   putative pentatricopeptide repeat-containing protein At1g02420 
 ppo-u.5   7456271   putative pentatricopeptide repeat-containing protein At1g02420 
 mtr-u.5   11415936   putative pentatricopeptide repeat-containing protein At1g02420 
 sly-u.5   101259811   putative pentatricopeptide repeat-containing protein At1g02420 
 sot-r.1   102601203   putative pentatricopeptide repeat-containing protein At1g02420 
 nta-r.1   107796606   putative pentatricopeptide repeat-containing protein At1g02420 
 nta-r.1   107827160   putative pentatricopeptide repeat-containing protein At1g02420 
 osa-u.5   4332013   putative pentatricopeptide repeat-containing protein At1g02420 
 zma-u.5   100304284   uncharacterized LOC100304284 
 tae-r.2   123093042   putative pentatricopeptide repeat-containing protein At1g02420 
 tae-r.2   123098323   putative pentatricopeptide repeat-containing protein At1g02420 
 hvu-r.1   123449370   putative pentatricopeptide repeat-containing protein At1g02420 
 bdi-r.1   100845534   putative pentatricopeptide repeat-containing protein At1g02420 

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Top 50 coexpressed genes to AT1G02420 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G02420 (ath-m.4.str coexpression data)

CoexMap"837779"


athAT1G02420 | Entrez gene ID : 837779      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu bdi sbi cre
Paralog 6 1 3 2 1 1 1 1 1 1 1 2 1 1 2 1 1 0 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0009507 [list] [network] chloroplast  (5014 genes)  ISM  
GO MF
Protein NP_171744.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 6,  extr 1,  nucl 1,  mito 1,  plas 1,  nucl_plas 1,  mito_plas 1  (predict for NP_171744.1)
Subcellular
localization
TargetP
scret 4  (predict for NP_171744.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT1G02420
ath-m.9
for
AT1G02420
ath-m.4.bio
for
AT1G02420
ath-m.4.hor
for
AT1G02420
ath-m.4.lig
for
AT1G02420
ath-m.4.tis
for
AT1G02420
bra-r.6
for
103836652
bna-r.1
for
125576679
bna-r.1
for
111211305
bna-r.1
for
125596613
ghi-r.1
for
107924181
ghi-r.1
for
107912299
cit-r.1
for
102617160
gma-u.5
for
100798456
vvi-u.5
for
100245186
ppo-u.5
for
7456271
mtr-u.5
for
11415936
sly-u.5
for
101259811
sot-r.1
for
102601203
nta-r.1
for
107796606
nta-r.1
for
107827160
osa-u.5
for
4332013
zma-u.5
for
100304284
tae-r.2
for
123093042
tae-r.2
for
123098323
hvu-r.1
for
123449370
bdi-r.1
for
100845534


Ortholog ID: 9772
Species bra bna bna bna ghi ghi cit gma vvi ppo mtr sly sot nta nta osa zma tae tae hvu bdi
Symbol LOC103836652 LOC111211305 LOC125596613 LOC106397846 LOC107924181 LOC107912299 LOC102617160 LOC100798456 LOC100245186 LOC7456271 LOC11415936 LOC101259811 LOC102601203 LOC107796606 LOC107827160 LOC4332013 LOC100304284 LOC123093042 LOC123098323 LOC123449370 LOC100845534
Function* putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 uncharacterized LOC100304284 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420 putative pentatricopeptide repeat-containing protein At1g02420
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03008 Ribosome biogenesis in eukaryotes 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00190 Oxidative phosphorylation 5
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly00500 Starch and sucrose metabolism 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 103836652 111211305 125596613 106397846 107924181 107912299 102617160 100798456 100245186 7456271 11415936 101259811 102601203 107796606 107827160 4332013 100304284 123093042 123098323 123449370 100845534
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