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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT1G12470   zinc ion binding protein 
 ath-u.5   AT1G12470   zinc ion binding protein 
 ath-r.7   AT1G12470   zinc ion binding protein 
 ath-m.9   AT1G12470   zinc ion binding protein 
 ath-e.2   AT1G12470   zinc ion binding protein 
 ath-m.4.bio   AT1G12470   zinc ion binding protein 
 ath-m.4.hor   AT1G12470   zinc ion binding protein 
 ath-m.4.lig   AT1G12470   zinc ion binding protein 
 ath-m.4.tis   AT1G12470   zinc ion binding protein 
 bra-r.6   103871998   vacuolar sorting protein 18 
 bra-r.6   103836160   vacuolar sorting protein 18 
 bna-r.1   111216250   vacuolar sorting protein 18 
 bna-r.1   106435980   vacuolar sorting protein 18 
 bna-r.1   106445576   vacuolar sorting protein 18 
 ghi-r.1   107928911   vacuolar sorting protein 18 
 ghi-r.1   121213698   vacuolar sorting protein 18 
 cit-r.1   102612233   vacuolar sorting protein 18 
 gma-u.5   100818056   vacuolar sorting protein 18 
 gma-u.5   100793073   vacuolar sorting protein 18 
 vvi-u.5   100254609   vacuolar sorting protein 18 
 ppo-u.5   7494438   vacuolar sorting protein 18 
 mtr-u.5   11411031   vacuolar sorting protein 18 
 sly-u.5   101246251   vacuolar sorting protein 18 
 sot-r.1   102603014   vacuolar protein sorting-associated protein 18 homolog 
 sot-r.1   102579913   vacuolar protein sorting-associated protein 18 homolog 
 nta-r.1   107826915   vacuolar sorting protein 18 
 nta-r.1   107829786   vacuolar sorting protein 18 
 osa-u.5   4344807   vacuolar sorting protein 18 
 zma-u.5   103642454   vacuolar sorting protein 18 
 tae-r.2   123122771   vacuolar sorting protein 18 
 tae-r.2   123113257   vacuolar sorting protein 18 
 tae-r.2   123104961   vacuolar sorting protein 18 
 hvu-r.1   123452156   vacuolar sorting protein 18 
 sbi-r.1   8080905   vacuolar protein sorting-associated protein 18 homolog 
 bdi-r.1   100830636   vacuolar protein sorting-associated protein 18 homolog 
 cre-r.1   CHLRE_07g328550v5   uncharacterized protein 

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Top 50 coexpressed genes to AT1G12470 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G12470 (ath-m.4.str coexpression data)

CoexMap"837804"


athAT1G12470 | Entrez gene ID : 837804      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 2 2 1 1 3 1 1 1 1
Show/Hide Columns:        



CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath04148 [list] [network] Efferocytosis (53 genes)
GO BP
GO:0010015 [list] [network] root morphogenesis  (324 genes)  IMP  
GO CC
GO:0033263 [list] [network] CORVET complex  (6 genes)  IDA  
GO:0030897 [list] [network] HOPS complex  (7 genes)  IDA  
GO:0009705 [list] [network] plant-type vacuole membrane  (117 genes)  IDA  
GO:0005576 [list] [network] extracellular region  (3158 genes)  HDA  
GO:0005737 [list] [network] cytoplasm  (14000 genes)  IDA  
GO MF
Protein NP_172709.2 [sequence] [blastp]
Subcellular
localization
wolf
chlo 4,  cyto 4,  nucl 1,  mito 1,  vacu 1,  cysk_nucl 1,  nucl_plas 1  (predict for NP_172709.2)
Subcellular
localization
TargetP
other 6  (predict for NP_172709.2)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT1G12470
ath-u.5
for
AT1G12470
ath-r.7
for
AT1G12470
ath-m.9
for
AT1G12470
ath-e.2
for
AT1G12470
ath-m.4.bio
for
AT1G12470
ath-m.4.hor
for
AT1G12470
ath-m.4.lig
for
AT1G12470
ath-m.4.tis
for
AT1G12470
bra-r.6
for
103871998
bra-r.6
for
103836160
bna-r.1
for
111216250
bna-r.1
for
106435980
bna-r.1
for
106445576
ghi-r.1
for
107928911
ghi-r.1
for
121213698
cit-r.1
for
102612233
gma-u.5
for
100818056
gma-u.5
for
100793073
vvi-u.5
for
100254609
ppo-u.5
for
7494438
mtr-u.5
for
11411031
sly-u.5
for
101246251
sot-r.1
for
102603014
sot-r.1
for
102579913
nta-r.1
for
107826915
nta-r.1
for
107829786
osa-u.5
for
4344807
zma-u.5
for
103642454
tae-r.2
for
123122771
tae-r.2
for
123113257
tae-r.2
for
123104961
hvu-r.1
for
123452156
sbi-r.1
for
8080905
bdi-r.1
for
100830636
cre-r.1
for
CHLRE_07g328550v5


Ortholog ID: 8232
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot sot nta nta osa zma tae tae tae hvu sbi bdi cre
Symbol AT1G12470 LOC103871998 LOC103836160 LOC111216250 LOC106445576 LOC106382388 LOC107928911 LOC121213698 LOC102612233 LOC100818056 LOC100793073 LOC100254609 LOC7494438 LOC11411031 LOC101246251 LOC102603014 LOC102579913 LOC107826915 LOC107829786 LOC4344807 LOC103642454 LOC123122771 LOC123113257 LOC123104961 LOC123452156 LOC8080905 LOC100830636 CHLRE_07g328550v5
Function* zinc ion binding protein vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18-like vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar protein sorting-associated protein 18 homolog vacuolar protein sorting-associated protein 18 homolog vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar sorting protein 18 vacuolar protein sorting-associated protein 18 homolog vacuolar protein sorting-associated protein 18 homolog uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04144 Endocytosis 5
ath04142 Lysosome 4
ath05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna04148 Efferocytosis 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 4
ghi04144 Endocytosis 4
ghi05100 Bacterial invasion of epithelial cells 4
ghi04814 Motor proteins 3
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi04142 Lysosome 4
ghi04144 Endocytosis 4
ghi05100 Bacterial invasion of epithelial cells 4
ghi04814 Motor proteins 3
ghi04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04148 Efferocytosis 2
cit04142 Lysosome 2
cit04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03018 RNA degradation 3
gma03013 Nucleocytoplasmic transport 2
gma03250 Viral life cycle - HIV-1 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04144 Endocytosis 4
gma04142 Lysosome 2
gma05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 3
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 3
ppo04144 Endocytosis 2
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
nta03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa04144 Endocytosis 2
osa04148 Efferocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 4
tae04144 Endocytosis 4
tae05100 Bacterial invasion of epithelial cells 4
tae04148 Efferocytosis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 4
tae04144 Endocytosis 4
tae05100 Bacterial invasion of epithelial cells 4
tae04148 Efferocytosis 3
tae04141 Protein processing in endoplasmic reticulum 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae04142 Lysosome 5
tae04144 Endocytosis 5
tae05100 Bacterial invasion of epithelial cells 4
tae04141 Protein processing in endoplasmic reticulum 4
tae04148 Efferocytosis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03013 Nucleocytoplasmic transport 3
sbi03040 Spliceosome 2
sbi04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre04148 Efferocytosis 3
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 837804 103871998 103836160 111216250 106445576 106382388 107928911 121213698 102612233 100818056 100793073 100254609 7494438 11411031 101246251 102603014 102579913 107826915 107829786 4344807 103642454 123122771 123113257 123104961 123452156 8080905 100830636 5716214
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