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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.str   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-r.7   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.9   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-e.2   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.bio   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.hor   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.lig   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-m.4.tis   AT1G55630   Pentatricopeptide repeat (PPR) superfamily protein 
 ath-u.5   AT3G60050   Pentatricopeptide repeat (PPR) superfamily protein 
 bra-r.6   103871030   pentatricopeptide repeat-containing protein At1g55630 
 bra-r.6   103862916   pentatricopeptide repeat-containing protein At3g60050 
 bna-r.1   111214966   pentatricopeptide repeat-containing protein At3g60050-like 
 bna-r.1   106345778   pentatricopeptide repeat-containing protein At1g55630 
 bna-r.1   106391425   pentatricopeptide repeat-containing protein At1g55630 
 ghi-r.1   107943475   pentatricopeptide repeat-containing protein At3g60050 
 ghi-r.1   107936904   pentatricopeptide repeat-containing protein At3g60050 
 cit-r.1   102609350   pentatricopeptide repeat-containing protein At1g55630-like 
 gma-u.5   100805547   pentatricopeptide repeat-containing protein At3g60050 
 gma-u.5   100792512   pentatricopeptide repeat-containing protein At3g60050 
 vvi-u.5   100255723   pentatricopeptide repeat-containing protein At1g55630 
 ppo-u.5   7454512   pentatricopeptide repeat-containing protein At1g55630 
 mtr-u.5   25496345   pentatricopeptide repeat-containing protein At3g60050 
 mtr-u.5   25485065   pentatricopeptide repeat-containing protein At1g55630 
 sly-u.5   101255741   pentatricopeptide repeat-containing protein At3g60050-like 
 sot-r.1   102596322   pentatricopeptide repeat-containing protein At3g60050-like 
 nta-r.1   107813020   pentatricopeptide repeat-containing protein At1g55630-like 
 nta-r.1   107788224   pentatricopeptide repeat-containing protein At1g55630 
 osa-u.5   4349063   pentatricopeptide repeat-containing protein At3g60050 
 zma-u.5   100273731   Pentatricopeptide repeat-containing protein 
 tae-r.2   123181188   pentatricopeptide repeat-containing protein At1g55630 
 tae-r.2   123125391   pentatricopeptide repeat-containing protein At3g60050-like 
 tae-r.2   123048206   pentatricopeptide repeat-containing protein At3g60050 
 hvu-r.1   123433805   pentatricopeptide repeat-containing protein At3g60050-like 
 sbi-r.1   8067072   pentatricopeptide repeat-containing protein At3g60050 
 bdi-r.1   100830027   pentatricopeptide repeat-containing protein At3g60050 

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Top 50 coexpressed genes to AT1G55630 (ath-m.4.str coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT1G55630 (ath-m.4.str coexpression data)

CoexMap"842012"


athAT1G55630 | Entrez gene ID : 842012      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 10 2 3 2 1 2 1 1 2 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO CC
GO:0005739 [list] [network] mitochondrion  (4244 genes)  ISM  
GO MF
Protein NP_175959.1 [sequence] [blastp]
Subcellular
localization
wolf
chlo 5,  mito 2,  pero 1,  extr 1,  E.R. 1,  cyto_pero 1  (predict for NP_175959.1)
Subcellular
localization
TargetP
mito 5  (predict for NP_175959.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.str
for
AT1G55630
ath-u.5
for
AT1G55630
ath-r.7
for
AT1G55630
ath-m.9
for
AT1G55630
ath-e.2
for
AT1G55630
ath-m.4.bio
for
AT1G55630
ath-m.4.hor
for
AT1G55630
ath-m.4.lig
for
AT1G55630
ath-m.4.tis
for
AT1G55630
ath-u.5
for
AT3G60050
bra-r.6
for
103871030
bra-r.6
for
103862916
bna-r.1
for
111214966
bna-r.1
for
106345778
bna-r.1
for
106391425
ghi-r.1
for
107943475
ghi-r.1
for
107936904
cit-r.1
for
102609350
gma-u.5
for
100805547
gma-u.5
for
100792512
vvi-u.5
for
100255723
ppo-u.5
for
7454512
mtr-u.5
for
25496345
mtr-u.5
for
25485065
sly-u.5
for
101255741
sot-r.1
for
102596322
nta-r.1
for
107813020
nta-r.1
for
107788224
osa-u.5
for
4349063
zma-u.5
for
100273731
tae-r.2
for
123181188
tae-r.2
for
123125391
tae-r.2
for
123048206
hvu-r.1
for
123433805
sbi-r.1
for
8067072
bdi-r.1
for
100830027


Ortholog ID: 8065
Species ath ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT1G55630 AT3G60050 LOC103871030 LOC103862916 LOC111214966 LOC106345778 LOC106445117 LOC107943475 LOC107936904 LOC102609350 LOC100805547 LOC100792512 LOC100255723 LOC7454512 LOC25496345 LOC25485065 LOC101255741 LOC102596322 LOC107813020 LOC107788224 LOC4349063 LOC100273731 LOC123181188 LOC123125391 LOC123048206 LOC123433805 LOC8067072 LOC100830027
Function* Pentatricopeptide repeat (PPR) superfamily protein Pentatricopeptide repeat (PPR) superfamily protein pentatricopeptide repeat-containing protein At1g55630 pentatricopeptide repeat-containing protein At3g60050 pentatricopeptide repeat-containing protein At3g60050-like pentatricopeptide repeat-containing protein At1g55630 pentatricopeptide repeat-containing protein At3g60050 pentatricopeptide repeat-containing protein At3g60050 pentatricopeptide repeat-containing protein At3g60050 pentatricopeptide repeat-containing protein At1g55630-like pentatricopeptide repeat-containing protein At3g60050 pentatricopeptide repeat-containing protein At3g60050 pentatricopeptide repeat-containing protein At1g55630 pentatricopeptide repeat-containing protein At1g55630 pentatricopeptide repeat-containing protein At3g60050 pentatricopeptide repeat-containing protein At1g55630 pentatricopeptide repeat-containing protein At3g60050-like pentatricopeptide repeat-containing protein At3g60050-like pentatricopeptide repeat-containing protein At1g55630-like pentatricopeptide repeat-containing protein At1g55630 pentatricopeptide repeat-containing protein At3g60050 Pentatricopeptide repeat-containing protein pentatricopeptide repeat-containing protein At1g55630 pentatricopeptide repeat-containing protein At3g60050-like pentatricopeptide repeat-containing protein At3g60050 pentatricopeptide repeat-containing protein At3g60050-like pentatricopeptide repeat-containing protein At3g60050 pentatricopeptide repeat-containing protein At3g60050
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03013 Nucleocytoplasmic transport 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 2
bna00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna00230 Purine metabolism 2
bna00670 One carbon pool by folate 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03030 DNA replication 2
ghi03410 Base excision repair 2
ghi03420 Nucleotide excision repair 2
ghi03440 Homologous recombination 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr03020 RNA polymerase 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03020 RNA polymerase 3
tae00190 Oxidative phosphorylation 2
tae00860 Porphyrin metabolism 2
tae01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03008 Ribosome biogenesis in eukaryotes 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03010 Ribosome 4
hvu03008 Ribosome biogenesis in eukaryotes 4
hvu03018 RNA degradation 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 842012 825175 103871030 103862916 111214966 106345778 106445117 107943475 107936904 102609350 100805547 100792512 100255723 7454512 25496345 25485065 101255741 102596322 107813020 107788224 4349063 100273731 123181188 123125391 123048206 123433805 8067072 100830027
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