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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   CPL4   C-terminal domain phosphatase-like 4 
 ath-u.5   CPL4   C-terminal domain phosphatase-like 4 
 ath-r.7   CPL4   C-terminal domain phosphatase-like 4 
 ath-m.9   CPL4   C-terminal domain phosphatase-like 4 
 ath-e.2   CPL4   C-terminal domain phosphatase-like 4 
 ath-m.4.bio   CPL4   C-terminal domain phosphatase-like 4 
 ath-m.4.hor   CPL4   C-terminal domain phosphatase-like 4 
 ath-m.4.lig   CPL4   C-terminal domain phosphatase-like 4 
 ath-m.4.str   CPL4   C-terminal domain phosphatase-like 4 
 bra-r.6   103856720   RNA polymerase II C-terminal domain phosphatase-like 4 
 bra-r.6   103845238   RNA polymerase II C-terminal domain phosphatase-like 4 
 bna-r.1   106435557   RNA polymerase II C-terminal domain phosphatase-like 4 
 bna-r.1   106387183   RNA polymerase II C-terminal domain phosphatase-like 4 
 bna-r.1   106425997   RNA polymerase II C-terminal domain phosphatase-like 4 
 ghi-r.1   107938696   RNA polymerase II C-terminal domain phosphatase-like 4 
 ghi-r.1   107927509   RNA polymerase II C-terminal domain phosphatase-like 4 
 cit-r.1   102609513   RNA polymerase II C-terminal domain phosphatase-like 4 
 cit-r.1   107176483   RNA polymerase II C-terminal domain phosphatase-like 4 
 gma-u.5   100800381   RNA polymerase II C-terminal domain phosphatase-like 4 
 gma-u.5   100785033   RNA polymerase II C-terminal domain phosphatase-like 4 
 vvi-u.5   100854176   RNA polymerase II C-terminal domain phosphatase-like 4 
 vvi-u.5   100852833   RNA polymerase II C-terminal domain phosphatase-like 4 
 mtr-u.5   25494112   RNA polymerase II C-terminal domain phosphatase-like 4 
 sly-u.5   101264737   RNA polymerase II C-terminal domain phosphatase-like 4 
 sot-r.1   102591519   RNA polymerase II C-terminal domain phosphatase-like 4 
 nta-r.1   107802706   RNA polymerase II C-terminal domain phosphatase-like 4 
 nta-r.1   107779643   RNA polymerase II C-terminal domain phosphatase-like 4 
 nta-r.1   107791237   RNA polymerase II C-terminal domain phosphatase-like 4 
 osa-u.5   4338679   RNA polymerase II C-terminal domain phosphatase-like 4 
 zma-u.5   100286085   CPL3 
 tae-r.2   123053225   RNA polymerase II C-terminal domain phosphatase-like 4 
 tae-r.2   123189137   RNA polymerase II C-terminal domain phosphatase-like 4 
 tae-r.2   123045386   RNA polymerase II C-terminal domain phosphatase-like 4 
 hvu-r.1   123442381   RNA polymerase II C-terminal domain phosphatase-like 4 
 hvu-r.1   123426640   RNA polymerase II C-terminal domain phosphatase-like 4 
 sbi-r.1   8069340   RNA polymerase II C-terminal domain phosphatase-like 4 
 sbi-r.1   8076850   RNA polymerase II C-terminal domain phosphatase-like 4 
 bdi-r.1   100831091   RNA polymerase II C-terminal domain phosphatase-like 4 
 bdi-r.1   100837063   RNA polymerase II C-terminal domain phosphatase-like 4 
 cre-r.1   CHLRE_02g102950v5   uncharacterized protein 

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Top 50 coexpressed genes to CPL4 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to CPL4 (ath-m.4.tis coexpression data)

CoexMap"5008312"


athCPL4 | Entrez gene ID : 5008312      
Species ath bra bna ghi cit gma vvi mtr sly sot nta osa zma tae hvu sbi bdi cre ppo
Paralog 9 2 3 2 2 2 2 1 1 1 3 1 1 3 2 2 2 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG
GO BP
GO:0009651 [list] [network] response to salt stress  (473 genes)  IEP  
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  IDA ISM  
GO MF
GO:0005515 [list] [network] protein binding  (5363 genes)  IPI  
Protein NP_001078764.1 [sequence] [blastp]
NP_001332019.1 [sequence] [blastp]
NP_001332020.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 4,  cyto 3,  chlo 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001078764.1)
nucl 4,  cyto 4,  chlo 1,  extr 1,  cysk 1  (predict for NP_001332019.1)
nucl 5,  cyto 3,  chlo 1,  cyto_pero 1,  cyto_E.R. 1,  cyto_plas 1  (predict for NP_001332020.1)
Subcellular
localization
TargetP
other 7,  chlo 3  (predict for NP_001078764.1)
other 7  (predict for NP_001332019.1)
other 8  (predict for NP_001332020.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
CPL4
ath-u.5
for
CPL4
ath-r.7
for
CPL4
ath-m.9
for
CPL4
ath-e.2
for
CPL4
ath-m.4.bio
for
CPL4
ath-m.4.hor
for
CPL4
ath-m.4.lig
for
CPL4
ath-m.4.str
for
CPL4
bra-r.6
for
103856720
bra-r.6
for
103845238
bna-r.1
for
106435557
bna-r.1
for
106387183
bna-r.1
for
106425997
ghi-r.1
for
107938696
ghi-r.1
for
107927509
cit-r.1
for
102609513
cit-r.1
for
107176483
gma-u.5
for
100800381
gma-u.5
for
100785033
vvi-u.5
for
100854176
vvi-u.5
for
100852833
mtr-u.5
for
25494112
sly-u.5
for
101264737
sot-r.1
for
102591519
nta-r.1
for
107802706
nta-r.1
for
107779643
nta-r.1
for
107791237
osa-u.5
for
4338679
zma-u.5
for
100286085
tae-r.2
for
123053225
tae-r.2
for
123189137
tae-r.2
for
123045386
hvu-r.1
for
123442381
hvu-r.1
for
123426640
sbi-r.1
for
8069340
sbi-r.1
for
8076850
bdi-r.1
for
100831091
bdi-r.1
for
100837063
cre-r.1
for
CHLRE_02g102950v5


Ortholog ID: 3878
Species ath bra bra bna bna bna ghi ghi cit cit gma gma vvi vvi sly sot nta nta nta osa zma tae tae tae hvu hvu sbi sbi bdi bdi cre
Symbol CPL4 LOC103856720 LOC103845238 LOC106435557 LOC106387183 LOC106425997 LOC107938696 LOC107927509 LOC102609513 LOC107176483 LOC100800381 LOC100785033 LOC100854176 LOC100852833 LOC101264737 LOC102591519 LOC107802706 LOC107779643 LOC107791237 LOC4338679 LOC100286085 LOC123045386 LOC123054355 LOC123054365 LOC123442381 LOC123426640 LOC8069340 LOC8076850 LOC100831091 LOC100837063 CHLRE_02g102950v5
Function* C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 CPL3 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 RNA polymerase II C-terminal domain phosphatase-like 4 uncharacterized protein
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
ath00480 Glutathione metabolism 2
ath04075 Plant hormone signal transduction 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi00400 Phenylalanine, tyrosine and tryptophan biosynthesis 2
ghi01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit03022 Basal transcription factors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 6
gma03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma03040 Spliceosome 2
gma03008 Ribosome biogenesis in eukaryotes 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04141 Protein processing in endoplasmic reticulum 2
vvi04144 Endocytosis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
nta03050 Proteasome 2
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta03082 ATP-dependent chromatin remodeling 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
osa03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma03040 Spliceosome 2
zma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03013 Nucleocytoplasmic transport 4
tae03015 mRNA surveillance pathway 4
tae04141 Protein processing in endoplasmic reticulum 3
tae03082 ATP-dependent chromatin remodeling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae00220 Arginine biosynthesis 2
tae01210 2-Oxocarboxylic acid metabolism 2
tae01230 Biosynthesis of amino acids 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
hvu03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03040 Spliceosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bdi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cre03083 Polycomb repressive complex 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 5008312 103856720 103845238 106435557 106387183 106425997 107938696 107927509 102609513 107176483 100800381 100785033 100854176 100852833 101264737 102591519 107802706 107779643 107791237 4338679 100286085 123045386 123054355 123054365 123442381 123426640 8069340 8076850 100831091 100837063 5725340
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