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Orthologous genes in OrthoFinder**

Species Gene Description
 ath-m.4.tis   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-u.5   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-r.7   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-m.9   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-e.2   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-m.4.bio   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-m.4.hor   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-m.4.lig   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 ath-m.4.str   AT3G11960   Cleavage and polyadenylation specificity factor (CPSF) A subunit protein 
 bra-r.6   103870295   splicing factor 3B subunit 3 
 bra-r.6   103859423   spliceosome-associated protein 130 A 
 bna-r.1   106452512   splicing factor 3B subunit 3 
 bna-r.1   106415087   splicing factor 3B subunit 3 
 bna-r.1   106401173   spliceosome-associated protein 130 A-like 
 ghi-r.1   107891227   splicing factor 3B subunit 3 
 ghi-r.1   107889475   splicing factor 3B subunit 3 
 cit-r.1   102624787   uncharacterized LOC102624787 
 gma-u.5   100799711   splicing factor 3B subunit 3 
 gma-u.5   100806799   splicing factor 3B subunit 3 
 vvi-u.5   100252096   pre-mRNA-splicing factor prp12 
 ppo-u.5   7455620   uncharacterized LOC7455620 
 mtr-u.5   25499564   splicing factor 3B subunit 3 
 sly-u.5   101261183   uncharacterized LOC101261183 
 sot-r.1   102600929   pre-mRNA-splicing factor prp12 
 nta-r.1   107775427   uncharacterized LOC107775427 
 nta-r.1   107784860   uncharacterized LOC107784860 
 osa-u.5   4342674   uncharacterized LOC4342674 
 zma-u.5   103632101   splicing factor 3B subunit 3 
 tae-r.2   123044856   splicing factor 3B subunit 3 
 tae-r.2   123188638   splicing factor 3B subunit 3 
 tae-r.2   123052774   splicing factor 3B subunit 3 
 hvu-r.1   123426147   DNA damage-binding protein 1 
 sbi-r.1   8063686   splicing factor 3B subunit 3 
 bdi-r.1   100839023   splicing factor 3B subunit 3 

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Top 50 coexpressed genes to AT3G11960 (ath-m.4.tis coexpression data)

 KEGG ID   Pathway name   #genes in coex list   #genes in genome   -log10(p)   Link to the KEGG* map 
(Multiple genes)

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Top 50 enrichment test to AT3G11960 (ath-m.4.tis coexpression data)

CoexMap"820369"


athAT3G11960 | Entrez gene ID : 820369      
Species ath bra bna ghi cit gma vvi ppo mtr sly sot nta osa zma tae hvu sbi bdi cre
Paralog 9 2 3 2 1 2 1 1 1 1 1 2 1 1 3 1 1 1 0
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CoexMap
Chloroplast
Nucleus

functional annotation
KEGG ath03040 [list] [network] Spliceosome (243 genes)
GO BP
GO CC
GO:0005634 [list] [network] nucleus  (10367 genes)  ISM  
GO MF
GO:0003676 [list] [network] nucleic acid binding  (3104 genes)  IEA  
Protein NP_001327782.1 [sequence] [blastp]
NP_001327783.1 [sequence] [blastp]
NP_187802.2 [sequence] [blastp]
NP_850565.1 [sequence] [blastp]
Subcellular
localization
wolf
nucl 8,  E.R. 1  (predict for NP_001327782.1)
nucl 8,  E.R. 1  (predict for NP_001327783.1)
nucl 8,  E.R. 1  (predict for NP_187802.2)
nucl 6,  E.R. 2,  chlo 1,  cyto 1  (predict for NP_850565.1)
Subcellular
localization
TargetP
chlo 9,  other 3  (predict for NP_001327782.1)
chlo 9,  other 3  (predict for NP_001327783.1)
chlo 9,  other 3  (predict for NP_187802.2)
chlo 9,  other 3  (predict for NP_850565.1)
Gene expression
All samples [Expression pattern]
Tissue specificity*
Show Coexpressed Genes
Gene Function KEGG Entrez
Gene
ID		 Other ID Link Target Condition-specific* Reference

ath-m.4.tis
for
AT3G11960
ath-u.5
for
AT3G11960
ath-r.7
for
AT3G11960
ath-m.9
for
AT3G11960
ath-e.2
for
AT3G11960
ath-m.4.bio
for
AT3G11960
ath-m.4.hor
for
AT3G11960
ath-m.4.lig
for
AT3G11960
ath-m.4.str
for
AT3G11960
bra-r.6
for
103870295
bra-r.6
for
103859423
bna-r.1
for
106452512
bna-r.1
for
106415087
bna-r.1
for
106401173
ghi-r.1
for
107891227
ghi-r.1
for
107889475
cit-r.1
for
102624787
gma-u.5
for
100799711
gma-u.5
for
100806799
vvi-u.5
for
100252096
ppo-u.5
for
7455620
mtr-u.5
for
25499564
sly-u.5
for
101261183
sot-r.1
for
102600929
nta-r.1
for
107775427
nta-r.1
for
107784860
osa-u.5
for
4342674
zma-u.5
for
103632101
tae-r.2
for
123044856
tae-r.2
for
123188638
tae-r.2
for
123052774
hvu-r.1
for
123426147
sbi-r.1
for
8063686
bdi-r.1
for
100839023


Ortholog ID: 8453
Species ath bra bra bna bna bna ghi ghi cit gma gma vvi ppo mtr sly sot nta nta osa zma tae tae tae hvu sbi bdi
Symbol AT3G11960 LOC103870295 LOC103859423 LOC106452512 LOC106401173 LOC106353072 LOC107891227 LOC107889475 LOC102624787 LOC100799711 LOC100806799 LOC100252096 LOC7455620 LOC25499564 LOC101261183 LOC102600929 LOC107775427 LOC107784860 LOC4342674 LOC103632101 LOC123044856 LOC123188638 LOC123052774 LOC123426147 LOC8063686 LOC100839023
Function* Cleavage and polyadenylation specificity factor (CPSF) A subunit protein splicing factor 3B subunit 3 spliceosome-associated protein 130 A splicing factor 3B subunit 3 spliceosome-associated protein 130 A-like spliceosome-associated protein 130 A splicing factor 3B subunit 3 splicing factor 3B subunit 3 uncharacterized LOC102624787 splicing factor 3B subunit 3 splicing factor 3B subunit 3 pre-mRNA-splicing factor prp12 uncharacterized LOC7455620 splicing factor 3B subunit 3 uncharacterized LOC101261183 pre-mRNA-splicing factor prp12 uncharacterized LOC107775427 uncharacterized LOC107784860 uncharacterized LOC4342674 splicing factor 3B subunit 3 splicing factor 3B subunit 3 splicing factor 3B subunit 3 splicing factor 3B subunit 3 DNA damage-binding protein 1 splicing factor 3B subunit 3 splicing factor 3B subunit 3
Coexmap

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Coexpression

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KEGG Info
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ath04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03040 Spliceosome 5
bra03082 ATP-dependent chromatin remodeling 2
bra03440 Homologous recombination 2
bra03420 Nucleotide excision repair 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bra03082 ATP-dependent chromatin remodeling 3
bra04120 Ubiquitin mediated proteolysis 2
bra04136 Autophagy - other 2
bra04518 Integrin signaling 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04712 Circadian rhythm - plant 2
bna04136 Autophagy - other 2
bna04142 Lysosome 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04712 Circadian rhythm - plant 2
bna04142 Lysosome 2
bna00760 Nicotinate and nicotinamide metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
bna03040 Spliceosome 4
bna04712 Circadian rhythm - plant 2
bna04142 Lysosome 2
bna00760 Nicotinate and nicotinamide metabolism 2
bna01240 Biosynthesis of cofactors 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ghi03040 Spliceosome 4
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
cit04120 Ubiquitin mediated proteolysis 3
cit04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 2
gma03040 Spliceosome 2
gma03082 ATP-dependent chromatin remodeling 2
gma04712 Circadian rhythm - plant 2
gma03018 RNA degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
gma04120 Ubiquitin mediated proteolysis 8
gma03040 Spliceosome 3
gma04136 Autophagy - other 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
vvi04120 Ubiquitin mediated proteolysis 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
ppo04142 Lysosome 2
ppo04144 Endocytosis 2
ppo05100 Bacterial invasion of epithelial cells 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
mtr04120 Ubiquitin mediated proteolysis 5
mtr03082 ATP-dependent chromatin remodeling 2
mtr00310 Lysine degradation 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sly04120 Ubiquitin mediated proteolysis 3
sly03082 ATP-dependent chromatin remodeling 2
sly03015 mRNA surveillance pathway 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sot03018 RNA degradation 2
sot04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
nta04120 Ubiquitin mediated proteolysis 3
nta03083 Polycomb repressive complex 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
zma04120 Ubiquitin mediated proteolysis 6
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03082 ATP-dependent chromatin remodeling 3
tae03040 Spliceosome 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 3
tae04120 Ubiquitin mediated proteolysis 2
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
tae03040 Spliceosome 4
tae03082 ATP-dependent chromatin remodeling 3
KEGG* ID Title #genes Link to the KEGG* map
(Multiple genes)
sbi03082 ATP-dependent chromatin remodeling 2
sbi04120 Ubiquitin mediated proteolysis 2
sbi03040 Spliceosome 2
Expression Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern Expression pattern
Entrez Gene ID* 820369 103870295 103859423 106452512 106401173 106353072 107891227 107889475 102624787 100799711 100806799 100252096 7455620 25499564 101261183 102600929 107775427 107784860 4342674 103632101 123044856 123188638 123052774 123426147 8063686 100839023
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